Files in nianqiaoju/agents
Toolkit for inference in agent-based modelss

DESCRIPTION

NAMESPACE

R/.DS_Store

R/.Rapp.history

R/.Rhistory

R/RcppExports.R R/check_config.R R/compute_distance_metropolis_idchecking.R R/compute_tv_poisbinom_translatedpois.R R/couple_condbern_kernel.R R/couple_metropolis_to_condbern.R R/idcheck_sampling.R R/logdpoisbinom.R R/logdsumbin.R R/logdtranspoisson.R R/logdtranspoisson_approx.R R/logit.R R/logsumexp.R R/metropolis_condbern.R R/mylast.R R/mylogodds.R R/myvar.R R/network_fully_connected.R R/network_sample_gnm.R R/network_sample_smallworld.R R/rcondbern.R R/setmytheme.R R/sir_apf.R R/sir_backward_information_filter_si.R R/sir_backward_information_filter_sumbin.R R/sir_backward_information_filter_sumbin_dev.R R/sir_csmc.R R/sir_csmc_si.R R/sir_forward_backward.R R/sir_get_alpha.R R/sir_get_state_space.R R/sir_kernel.R R/sir_kernel_twisted_i.R R/sir_kernel_twisted_ir.R R/sir_kernel_twisted_si.R R/sir_log_transition_density.R R/sir_logdpoismulti_given_xxprev.R R/sir_loglikelihood_complete.R R/sir_simulate.R R/sir_simulate_continuous.R R/sir_xx_gibbs_blocked_kernel.R R/sir_xx_gibbs_singlesite_kernel.R R/sir_xx_initialize.R R/sis_apf.R R/sis_backward_information_filter_sumbin.R R/sis_backward_information_filter_tp.R R/sis_bpf.R R/sis_csmc.R R/sis_csmc_tp.R R/sis_forward_backward.R R/sis_get_alpha.R R/sis_get_state_space.R R/sis_loglikelihood_complete.R R/sis_loglikelihood_marginal.R R/sis_simulate.R R/sis_simulate_countinuous.R R/sis_update_model_config.R R/sis_xx_gibbs_block_by_agents_kernel.R R/sis_xx_gibbs_singlesite_kernel.R R/sis_xx_gibbs_swap_alltimes.R R/sis_xx_initialize.R R/sis_xx_swap_at_time_kernel.R R/static_conditional_pmf_i.R R/static_get_alpha.R R/static_loglikelihood.R

R/static_xx_given_y_exact.R

R/static_xx_given_y_gibbs.R R/static_xx_swap.R README.md

agents.Rproj

figures/.DS_Store

figures/.Rhistory

figures/section2/.DS_Store

figures/section2/README.md figures/section2/compute_mse.R

figures/section2/data_posterior_long_n1000.RData

figures/section2/data_repeat_posterior_n1000.RData

figures/section2/data_static_observations.RData

figures/section2/data_tune_mh.RData

figures/section2/mcmc_timing.R

figures/section2/mcmc_timing.RData

figures/section2/repeat_posterior_n1000.R figures/section2/sample_posterior_long.R figures/section2/setup_random_alpha.R figures/section2/tune_mh.R

figures/section3/.DS_Store

figures/section3/.RData

figures/section3/.Rapp.history

figures/section3/.Rhistory

figures/section3/README.md figures/section3/compare_ess_3regimes.R figures/section3/compare_ess_hetero.R figures/section3/compare_gibbs_pmcmc.R figures/section3/compare_variance_logzhat.R figures/section3/compare_variance_rho.R

figures/section3/data_compare_ess_3regimes.RData

figures/section3/data_compare_ess_hetero.RData

figures/section3/data_generate_grid_hetero.RData

figures/section3/data_generate_grid_hetero_slopes.RData

figures/section3/data_generate_grid_rho_fix_beta.RData

figures/section3/data_repeat_zhat_dgp_approx.RData

figures/section3/data_repeat_zhat_dgp_exact.RData

figures/section3/data_repeat_zhat_dgp_exact_addcsmc2.RData

figures/section3/data_repeat_zhat_jeremy.RData

figures/section3/data_repeat_zhat_nondgp_approx.RData

figures/section3/data_repeat_zhat_nondgp_exact.RData

figures/section3/data_repeat_zhat_nondgp_exact_addcsmc2.RData

figures/section3/data_run_block5_gibbs_dgpinit.RData

figures/section3/data_run_block5_gibbs_randominit.RData

figures/section3/data_run_pmcmc_final.RData

figures/section3/data_run_pmcmc_prediction_30obs_dgpinit.RData

figures/section3/data_run_pmcmc_randominitial.RData

figures/section3/data_run_singlesite_gibbs_dgpinit.RData

figures/section3/data_run_singlesite_gibbs_randominit.RData

figures/section3/data_setup_hetero.RData

figures/section3/results_zhat_dgp_exact.txt

figures/section3/results_zhat_nondgp_exact.txt

figures/section3/run_block5_gibbs.R figures/section3/run_pmcmc.R figures/section3/run_pmcmc_shortobs.R figures/section3/run_singlesite_gibbs.R figures/section3/setup_hetero.R figures/section3/setup_mcmc.R figures/section3/simulate_posterior_predictions.R inst/install_and_load.R inst/set_plots.R man/agents-package.Rd man/check_model_config.Rd man/check_particle_config.Rd man/compute_distance_metropolis_to_condbern.Rd man/compute_tv_poisbinom_translatedpois.Rd man/couple_condbern_kernel.Rd man/couple_metropolis_to_condbern.Rd man/expit.Rd man/get_meetingtime_metropolis_idchecking.Rd man/idcheck_sampling.Rd man/logdpoisbinom.Rd man/logdsumbin.Rd man/logdtranspoisson.Rd man/logdtranspoisson_approx.Rd man/logit.Rd man/lw.logmean.Rd man/lw.logsd.Rd man/lw.logsum.Rd man/lw.normalize.Rd man/lw_logsum_cpp.Rd man/lw_normalize_cpp.Rd man/metropolis_condbern.Rd man/mylast.Rd man/mylogodds.Rd man/network_fully_connected.Rd man/network_sample_gnp.Rd man/network_sample_smallworld.Rd man/rcondbern.Rd man/rcppeigen_hello_world.Rd man/sir_backward_information_filter_sumbin.Rd man/sir_backward_information_filter_sumbin_dev.Rd man/sir_csmc.Rd man/sir_forward_backward.Rd man/sir_get_alpha.Rd man/sir_get_state_space.Rd man/sir_kernel.Rd man/sir_kernel_twisted_i.Rd man/sir_kernel_twisted_ir.Rd man/sir_log_transition_density.Rd man/sir_logdpoismulti_given_xxprev.Rd man/sir_loglikelihood_complete.Rd man/sir_simulate.Rd man/sir_xx_gibbs_blocked_kernel.Rd man/sir_xx_gibbs_singlesite_kernel.Rd man/sir_xx_initialize.Rd man/sis_apf.Rd man/sis_backward_information_filter_sumbin.Rd man/sis_backward_information_filter_tp.Rd man/sis_bpf.Rd man/sis_csmc.Rd man/sis_csmc_tp.Rd man/sis_forward_backward.Rd man/sis_get_alpha.Rd man/sis_get_state_space.Rd man/sis_loglikelihood_complete.Rd man/sis_simulate.Rd man/sis_simulate_continuous.Rd man/sis_xx_gibbs_block_by_agents_kernel.Rd man/sis_xx_gibbs_singlesite_kernel.Rd man/sis_xx_gibbs_swap_alltimes.Rd man/sis_xx_gibbs_swap_at_time_kernel.Rd man/sis_xx_initialize.Rd man/static_conditional_pmf_i.Rd man/static_get_alpha.Rd man/static_loglikelihood.Rd man/static_xx_swap.Rd

src/.DS_Store

src/Makevars

src/Makevars.win

src/RcppExports.cpp

src/RcppExports.o

src/RcppExports.so.o

src/agents.so

src/complete_log_likelihood_sis.o

src/dprodbern.o

src/forward_algorithm.o

src/get_runifs.cpp

src/get_runifs.o

src/idchecking_cpp.cpp

src/idchecking_cpp.o

src/logdbern_sum_cpp.cpp

src/logdbern_sum_cpp.o

src/logdensities.h

src/logdpoisbinom_cpp.cpp

src/logdpoisbinom_cpp.o

src/logsumexp.cpp

src/logsumexp.h

src/logsumexp.o

src/logsumexp.so.o

src/metropolis_condbern_cpp.cpp

src/metropolis_condbern_cpp.o

src/mhconditionalbernoulli.cpp

src/mhconditionalbernoulli.o

src/misc_ir2index_cpp.o

src/multinomial_cpp.cpp

src/multinomial_cpp.o

src/multinomial_resampling_cpp.cpp

src/multinomial_resampling_cpp.o

src/rcppeigen_hello_world.cpp

src/rcppeigen_hello_world.o

src/rcppeigen_hello_world.so.o

src/sampling.h

src/sir_bif.cpp

src/sir_bif.o

src/sis_apf_exact_full_cpp.cpp

src/sis_apf_exact_full_cpp.o

src/sis_cpp.h

src/sis_forward_algorithm.cpp

src/sis_forward_algorithm.o

src/sis_get_alpha_cpp.o

src/sis_get_alpha_full_cpp.cpp

src/sis_get_alpha_full_cpp.o

src/sis_loglikelihood_complete_cpp.o

src/sis_xx_gibbs_block_full_cpp..cpp

src/sis_xx_gibbs_block_full_cpp..o

src/sis_xx_gibbs_singlesite_full_cpp.cpp

src/sis_xx_gibbs_singlesite_full_cpp.o

src/sis_xx_gibbs_swap_alltimes_cpp.o

src/sis_xx_gibbs_swap_full_cpp.cpp

src/sis_xx_gibbs_swap_full_cpp.o

src/static_xx_gibbs_cpp.cpp

src/static_xx_gibbs_cpp.o

nianqiaoju/agents documentation built on Feb. 19, 2021, 12:18 a.m.

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nianqiaoju/agents
Toolkit for inference in agent-based modelss

Files in nianqiaoju/agents
Toolkit for inference in agent-based modelss

R Package Documentation

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nianqiaoju/agents Toolkit for inference in agent-based modelss

Files in nianqiaoju/agents Toolkit for inference in agent-based modelss

R Package Documentation

Browse R Packages

We want your feedback!

nianqiaoju/agents
Toolkit for inference in agent-based modelss

Files in nianqiaoju/agents
Toolkit for inference in agent-based modelss