format_metadata: Format phyloseq metadata for calculating BD range overlaps.
In nick-youngblut/HTSSIP: High Throughput Sequencing of Stable Isotope Probing Data Analysis
Description
Usage
Arguments
Value
Examples
Description
Format phyloseq metadata for calculating BD range overlaps.
Usage
1
format_metadata(physeq, ex = "Substrate=='12C-Con'", rep = "Replicate")
Arguments
physeq
Phyloseq object
ex
Expression for selecting the control samples to
compare to the non-control samples.
rep
Column specifying gradient replicates. If the column
is not present, then all are considered "Replicate=1"
Value
a data.frame object of formatted metadata
Examples
1
2
3
4
5
6
## Not run:
data(physeq_S2D1)
ex = "Substrate=='12C-Con'"
metadata = format_metadata(physeq_S2D1, ex)
## End(Not run)
nick-youngblut/HTSSIP documentation built on May 23, 2019, 4:46 p.m.
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Description Usage Arguments Value Examples
Description
Format phyloseq metadata for calculating BD range overlaps.
Usage
1 | format_metadata(physeq, ex = "Substrate=='12C-Con'", rep = "Replicate")
|
Arguments
physeq |
Phyloseq object |
ex |
Expression for selecting the control samples to compare to the non-control samples. |
rep |
Column specifying gradient replicates. If the column is not present, then all are considered "Replicate=1" |
Value
a data.frame object of formatted metadata
Examples
1 2 3 4 5 6 | ## Not run:
data(physeq_S2D1)
ex = "Substrate=='12C-Con'"
metadata = format_metadata(physeq_S2D1, ex)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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