physeq_format: Checking format of phyloseq object for HTSSIP compatibility
In nick-youngblut/HTSSIP: High Throughput Sequencing of Stable Isotope Probing Data Analysis
Description
Usage
Arguments
Value
Examples
Description
Checking format of phyloseq object for HTSSIP compatibility
Usage
1
physeq_format(physeq)
Arguments
physeq
Phyloseq object
Value
phyloseq object
Examples
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# this data should be formatted for HTSSIP
data(physeq_S2D2)
physeq_format(physeq_S2D2)
# this data should NOT be correctly formatted for HTSSIP
## Not run:
library(phyloseq)
data(GlobalPatterns)
tryCatch(
physeq_format(GlobalPatterns),
function(e) e
)
## End(Not run)
nick-youngblut/HTSSIP documentation built on May 23, 2019, 4:46 p.m.
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Description Usage Arguments Value Examples
Description
Checking format of phyloseq object for HTSSIP compatibility
Usage
1 | physeq_format(physeq)
|
Arguments
physeq |
Phyloseq object |
Value
phyloseq object
Examples
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | # this data should be formatted for HTSSIP
data(physeq_S2D2)
physeq_format(physeq_S2D2)
# this data should NOT be correctly formatted for HTSSIP
## Not run:
library(phyloseq)
data(GlobalPatterns)
tryCatch(
physeq_format(GlobalPatterns),
function(e) e
)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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