qSIP_atom_excess_format: Reformat a phyloseq object of qSIP_atom_excess analysis
In nick-youngblut/HTSSIP: High Throughput Sequencing of Stable Isotope Probing Data Analysis
Description
Usage
Arguments
Value
View source: R/qSIP_atom_excess.R
Description
Reformat a phyloseq object of qSIP_atom_excess analysis
Usage
1
qSIP_atom_excess_format(physeq, control_expr, treatment_rep)
Arguments
physeq
A phyloseq object
control_expr
An expression for identifying unlabeled control
samples in the phyloseq object (eg., "Substrate=='12C-Con'")
treatment_rep
Which column in the phyloseq sample data designates
replicate treatments
Value
numeric value: atom fraction excess (A)
nick-youngblut/HTSSIP documentation built on May 23, 2019, 4:46 p.m.
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Description Usage Arguments Value
View source: R/qSIP_atom_excess.R
Description
Reformat a phyloseq object of qSIP_atom_excess analysis
Usage
1 | qSIP_atom_excess_format(physeq, control_expr, treatment_rep)
|
Arguments
physeq |
A phyloseq object |
control_expr |
An expression for identifying unlabeled control samples in the phyloseq object (eg., "Substrate=='12C-Con'") |
treatment_rep |
Which column in the phyloseq sample data designates replicate treatments |
Value
numeric value: atom fraction excess (A)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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