importQIIMEBiomData: Import of QIIME 16S OTU table(s) in BIOM format
In nick-youngblut/Tax4Fun: Prediction of functional profiles from metagenomic 16S rRNA data
Description
Usage
Arguments
Value
Author(s)
References
View source: R/importQIIMEBiomData.R
Description
Import of 16S OTU table(s) predicted by QIIME based on the SILVA database and removal of suffixes from taxonomic tags containing uncultured archaeon/organisms/bacterium/crenarchaeote/euryarchaeote.
Usage
1
importQIIMEBiomData(inputFiles)
Arguments
inputFiles
(required): a character vector with one or more character string(s) indicating the file location(s) of the BIOM formatted file(s).
Value
A list containing the imported and modified QIIME OTU table(s) and sample name(s) which can be used as input for the Tax4Fun prediction.
Author(s)
Kathrin P. Asshauer kathrin@gobics.de
References
http://gobics.de/kathrin/Tax4Fun/Tax4Fun.html
nick-youngblut/Tax4Fun documentation built on July 14, 2019, 9:32 p.m.
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Description Usage Arguments Value Author(s) References
View source: R/importQIIMEBiomData.R
Description
Import of 16S OTU table(s) predicted by QIIME based on the SILVA database and removal of suffixes from taxonomic tags containing uncultured archaeon/organisms/bacterium/crenarchaeote/euryarchaeote.
Usage
1 | importQIIMEBiomData(inputFiles)
|
Arguments
inputFiles |
(required): a character vector with one or more character string(s) indicating the file location(s) of the BIOM formatted file(s). |
Value
A list containing the imported and modified QIIME OTU table(s) and sample name(s) which can be used as input for the Tax4Fun prediction.
Author(s)
Kathrin P. Asshauer kathrin@gobics.de
References
http://gobics.de/kathrin/Tax4Fun/Tax4Fun.html
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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