importQIIMEDataFile: Import of single QIIME 16S OTU table in txt format
In nick-youngblut/Tax4Fun: Prediction of functional profiles from metagenomic 16S rRNA data
Description
Usage
Arguments
Value
Author(s)
References
View source: R/importQIIMEData.R
Description
Import of 16S OTU table predicted by QIIME based on the SILVA database and removal of suffixes from taxonomic tags containing uncultured archaeon/organisms/bacterium/crenarchaeote/euryarchaeote.
Usage
1
Arguments
file
(required): a character vector with one character string indicating the file location of the txt formatted file.
Value
A list containing the imported and modified QIIME OTU table and sample name which can be used as input for the Tax4Fun prediction.
Author(s)
Kathrin P. Asshauer kathrin@gobics.de
References
nick-youngblut/Tax4Fun documentation built on July 14, 2019, 9:32 p.m.
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Description Usage Arguments Value Author(s) References
View source: R/importQIIMEData.R
Description
Import of 16S OTU table predicted by QIIME based on the SILVA database and removal of suffixes from taxonomic tags containing uncultured archaeon/organisms/bacterium/crenarchaeote/euryarchaeote.
Usage
1 |
Arguments
file |
(required): a character vector with one character string indicating the file location of the txt formatted file. |
Value
A list containing the imported and modified QIIME OTU table and sample name which can be used as input for the Tax4Fun prediction.
Author(s)
Kathrin P. Asshauer kathrin@gobics.de
References
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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