NEWS.md
In nickbrazeau/polySimIBD: Structured Wright Fisher Simulator for Malaria Genetics
News
polySimIBD v1.1.0
Finalized documentation and additional functions for the spatial discrete-time discrete-loci structured Wright-Fisher Model. New functions include a C++ version of the IBD calculation (get_bvibd) and a function to convert marginal bvtrees into Newick trees (bvtreeToNewick).
polySimIBD v1.0.0
Extension of the discrete-time discrete-loci structured Wright-Fisher Model for spatial "meta-populations". This model now assumes that there are spatial "meta-demes" and within each deme there are multiple hosts, each of who is considered as a "micro-deme" to model COI.
polySimIBD v0.5.1
Add "get realized"" functions for COI and IBD.
polySimIBD v0.5.0
The original discrete-time discrete-loci structured Wright-Fisher Model. A single "meta-deme" is considered with each host considered a "micro-deme".
The full mathematical model is described in: Verity, Aydemir, Brazeau et al. 20202 Nat. Comms. (PMC7192906).
nickbrazeau/polySimIBD documentation built on Sept. 26, 2024, 5:29 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
News
polySimIBD v1.1.0
Finalized documentation and additional functions for the spatial discrete-time discrete-loci structured Wright-Fisher Model. New functions include a C++ version of the IBD calculation (get_bvibd) and a function to convert marginal bvtrees into Newick trees (bvtreeToNewick).
polySimIBD v1.0.0
Extension of the discrete-time discrete-loci structured Wright-Fisher Model for spatial "meta-populations". This model now assumes that there are spatial "meta-demes" and within each deme there are multiple hosts, each of who is considered as a "micro-deme" to model COI.
polySimIBD v0.5.1
Add "get realized"" functions for COI and IBD.
polySimIBD v0.5.0
The original discrete-time discrete-loci structured Wright-Fisher Model. A single "meta-deme" is considered with each host considered a "micro-deme". The full mathematical model is described in: Verity, Aydemir, Brazeau et al. 20202 Nat. Comms. (PMC7192906).
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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