subset.dmrcate: subset DMRcate output

In nickfishbane/DMRtools: Tools for 450K differential methylation analysis

Description

filter differentially methylated regions for gene annotation and minimum number of probes

Usage

## S3 method for class 'dmrcate'
subset(res.obj, rmBlankAssoc = T, min.no.probes = 5)

Arguments

res.obj	A dmrcate.output object, generated by DMRcate::dmrcate()
rmBlankAssoc	Logical. If TRUE, removes regions that have no known genes in the region
min.no.probes	Integer specifying the minimum number of CpG sites per DMR to keep in the results object (must be at least 1)

nickfishbane/DMRtools documentation built on May 23, 2019, 4:47 p.m.