summarize.dmrcate: Summarize differential methylation analysis
In nickfishbane/DMRtools: Tools for 450K differential methylation analysis
Description
Usage
Arguments
Value
View source: R/summarize.dmrcate.R
Description
Create a brief numerical based on the output of a DMRcate analysis of differentially methylated regions (DMRs)
Usage
1
summarize.dmrcate(res.obj)
Arguments
res.obj
dmrcate.output object output from DMRcate::dmrcate.
Value
named vector of length 3.
"min3": number of DMRs with a minimum of 3 CpG sites
"min3_beta02": number of DMRs with at least 3 CpG sites and a max effect size of |β| > 0.2
"min3_anno": number of DMRs with at least 3 CpG sites and at least one gene annotated to the region.
@export
nickfishbane/DMRtools documentation built on May 23, 2019, 4:47 p.m.
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Description Usage Arguments Value
View source: R/summarize.dmrcate.R
Description
Create a brief numerical based on the output of a DMRcate analysis of differentially methylated regions (DMRs)
Usage
1 | summarize.dmrcate(res.obj)
|
Arguments
res.obj |
|
Value
named vector of length 3. "min3": number of DMRs with a minimum of 3 CpG sites "min3_beta02": number of DMRs with at least 3 CpG sites and a max effect size of |β| > 0.2 "min3_anno": number of DMRs with at least 3 CpG sites and at least one gene annotated to the region.
@export
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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