summarize.tt: Summarize differential methylation analysis

Description Usage Arguments Value

View source: R/summarize.tt.R

Description

Create a brief numerical based on the output of a limma analysis of differentially methylated CpG sites

Usage

1

Arguments

tt

Data.frame top-table object output from limma.tt. Must have column names 'adj.P.Val' and "betaFC"

Value

named vector of length 2. "Signif": number of CpG sites with FDR q-value < 0.05 "Sig.Eff" number of CpG sites with FDR q-value < 0.05 and mean effect size of |β| > 0.2

@export


nickfishbane/DMRtools documentation built on May 23, 2019, 4:47 p.m.