plotChronEnsDiff | R Documentation |
Plots the difference of an chron ensembleTable with the paleoData age
plotChronEnsDiff(
L,
ageEnsVar = "ageEnsemble",
age.var = "age",
depth.var = "depth",
paleo.num = NA,
paleo.meas.table.num = NA,
chron.num = NA,
model.num = NA,
ens.table.num = NA,
max.ensemble.members = NA,
strict.search = FALSE,
probs = c(0.025, 0.25, 0.5, 0.75, 0.975),
x.bin = NA,
y.bin = NA,
n.bins = 100,
color.low = "white",
color.high = "grey70",
alp = 1,
color.line = "Black",
line.width = 1,
add.to.plot = ggplot2::ggplot(),
n.ens.plot = 5,
color.ens.line = "red",
alp.ens.line = 0.7
)
L |
A LiPD object - an R serialization of a single LiPD file. It's a list, and is typically created by 'readLipd()' |
ageEnsVar |
name of the age ensemble variable in the chronData to search for |
age.var |
name of the age variable in the paleoData to search for |
depth.var |
name of the depth variable to search for |
paleo.num |
an integer that corresponds to paleo.numData object (L$paleoData[[?]]) has the measurementTable you want to modify |
paleo.meas.table.num |
an integer that corresponds to paleo.num measurementTable you want to add the ensemble to? |
chron.num |
an integer that corresponds to chron.numData object (L$crhonData[[?]]) has the model you want to get the ensemble from |
model.num |
an integer that corresponds to chron.num model you want to get the ensemble from? |
ens.table.num |
an integer that corresponds to chron.num model ensembleTable you want to get the ensemble from? |
max.ensemble.members |
Maximum number of ensemble members to map |
strict.search |
Use a strict.search to look for the ageEnsemble and depth variables. TRUE(default) or FALSE #' @param probs quantiles to calculate and plot |
probs |
quantiles to plot with ribbons |
x.bin |
vector of bin edges over which to bin. |
y.bin |
vector of bin edges over which to bin. |
n.bins |
number bins over which to calculate intervals. Used to calculate x.bin if not provided. |
color.low |
Band color of the outer most band. |
color.high |
Band color of the inner most band. |
alp |
Transparency of the band plot |
color.line |
Line color (following ggplot rules) |
line.width |
Width of the line |
add.to.plot |
A ggplot object to add this plot to. Default is ggplot() . |
n.ens.plot |
Number of ensemble members to plot |
color.ens.line |
color of the ensemble lines |
alp.ens.line |
transparency of the lines |
A ggplot object
Nick McKay
Other plot:
plotChron()
,
plotChronEns()
,
plotCorEns()
,
plotHistEns()
,
plotLine()
,
plotModelDistributions()
,
plotPcaEns()
,
plotPvalsEnsFdr()
,
plotRegressEns()
,
plotScatterEns()
,
plotScreeEns()
,
plotSpectraEns()
,
plotSpectrum()
,
plotSummary()
,
plotSummaryTs()
,
plotTimeseriesEnsLines()
,
plotTimeseriesEnsRibbons()
,
plotTimeseriesStack()
,
plotTrendLinesEns()
Other chron:
plotChron()
,
plotChronEns()
,
plotModelDistributions()
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