enrichGO: GO term enrichment using Fisher's exact test

Description Usage Arguments

View source: R/enrichGO.R

Description

GO term enrichment using Fisher's exact test

Usage

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enrichGO(
  sigGenes,
  allGenes,
  annotations = info[["annotations"]],
  ontology = "CC",
  nodeSize = 10,
  save = F,
  name,
  print = F
)

Arguments

sigGenes

either vector of genes of interest or numeric vector containing all genes

allGenes

background of genes

annotations

data base containing all annotations

ontology

which ontology to be used (CC, BP, MF)

nodeSize

minimum node size

save

should result table be saved

name

name

print

should a graphical output be printed


nicohuttmann/htmnanalysis documentation built on Dec. 6, 2020, 3:02 a.m.