enrichGOGroups: GO term enrichment using Fisher's exact test

In nicohuttmann/htmnanalysis: Analysis of Omics Data

Description

GO term enrichment using Fisher's exact test

Usage

enrichGOGroups(
  sigGenes,
  annotations = info[["annotations"]],
  inverse = F,
  ontology = "CC",
  nodeSize = 10,
  save = F,
  name,
  destination,
  view = T,
  print = F
)

Arguments

sigGenes	either vector of genes of interest or numeric vector containing all genes
annotations	data base containing all annotations
inverse	inverse enrichment
ontology	which ontology to be used (CC, BP, MF)
nodeSize	minimum node size
save	should result table be saved
name	name
destination	where to save
view	view tables
print	should a graphical output be printed
allGenes	background of genes

nicohuttmann/htmnanalysis documentation built on Dec. 6, 2020, 3:02 a.m.