Files in nicolaroberts/hdp
Hierarchical Dirichlet Process for categorical count data

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/aaa-classes-input.R R/aaa-classes-output.R R/aaa-generics-input.R R/aaa-generics-output.R R/cull_posterior_samples.R R/dp_activate.R R/dp_freeze.R R/hdp.R R/hdp_addconparam.R R/hdp_adddp.R R/hdp_extract_components.R R/hdp_getstate.R R/hdp_init.R R/hdp_multi_chain.R R/hdp_posterior.R R/hdp_prior_init.R R/hdp_quick_init.R R/hdp_setdata.R R/iterate.R R/plot_chain.R R/plot_components.R R/stirling.R R/utilities.R R/utilities_nr3.R R/zzz.R README.md data-raw/example_data_hdp.R data-raw/somatic_cancer_alterations_example.R
data/example_data_hdp.rda
data/example_data_hdp_prior.rda
data/example_known_priors.rda
data/hdp_p.rda
data/luad_multi.rda
data/mut_count.rda
data/mut_example_multi.rda
hdp.Rproj
inst/CITATION
man/comp_categ_counts.Rd man/comp_categ_distn.Rd man/comp_cos_merge.Rd man/comp_dp_counts.Rd man/comp_dp_distn.Rd man/cull_posterior_samples.Rd man/dp_activate.Rd man/dp_freeze.Rd man/example_data_hdp.Rd man/example_data_hdp_prior.Rd man/example_known_priors.Rd man/hdpBase-class.Rd man/hdpConparam-class.Rd man/hdpDP-class.Rd man/hdpSampleChain-class.Rd man/hdpSampleMulti-class.Rd man/hdpState-class.Rd man/hdp_addconparam.Rd man/hdp_adddp.Rd man/hdp_extract_components.Rd man/hdp_init.Rd man/hdp_multi_chain.Rd man/hdp_p.Rd man/hdp_posterior.Rd man/hdp_prior_init.Rd man/hdp_quick_init.Rd man/hdp_setdata.Rd man/luad_multi.Rd man/mut_count.Rd man/mut_example_multi.Rd man/numcomp.Rd man/plotchain.Rd man/plotcomp.Rd man/prop.ex.Rd
src/R-base.c
src/R-base.h
src/R-conparam.c
src/R-conparam.h
src/R-dp.c
src/R-dp.h
src/R-hdp.c
src/R-hdp.h
src/R-hdpMultinomial_iterate.c
src/R-hdpMultinomial_iterate.h
src/R-multinomial.c
src/R-multinomial.h
src/R-utils.c
src/R-utils.h
src/randutils.c
src/randutils.h
tests/testthat.R tests/testthat/test_codestyle.R vignettes/general.Rmd vignettes/mutation_signatures.Rmd
nicolaroberts/hdp documentation built on April 25, 2018, 4:27 p.m.