Files in nicolaroberts/hdp
Hierarchical Dirichlet Process for categorical count data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/aaa-classes-input.R
R/aaa-classes-output.R
R/aaa-generics-input.R
R/aaa-generics-output.R
R/cull_posterior_samples.R
R/dp_activate.R
R/dp_freeze.R
R/hdp.R
R/hdp_addconparam.R
R/hdp_adddp.R
R/hdp_extract_components.R
R/hdp_getstate.R
R/hdp_init.R
R/hdp_multi_chain.R
R/hdp_posterior.R
R/hdp_prior_init.R
R/hdp_quick_init.R
R/hdp_setdata.R
R/iterate.R
R/plot_chain.R
R/plot_components.R
R/stirling.R
R/utilities.R
R/utilities_nr3.R
R/zzz.R
README.md
data-raw/example_data_hdp.R
data-raw/somatic_cancer_alterations_example.R
data/example_data_hdp.rda
data/example_data_hdp_prior.rda
data/example_known_priors.rda
data/hdp_p.rda
data/luad_multi.rda
data/mut_count.rda
data/mut_example_multi.rda
hdp.Rproj
inst/CITATION
man/comp_categ_counts.Rd
man/comp_categ_distn.Rd
man/comp_cos_merge.Rd
man/comp_dp_counts.Rd
man/comp_dp_distn.Rd
man/cull_posterior_samples.Rd
man/dp_activate.Rd
man/dp_freeze.Rd
man/example_data_hdp.Rd
man/example_data_hdp_prior.Rd
man/example_known_priors.Rd
man/hdpBase-class.Rd
man/hdpConparam-class.Rd
man/hdpDP-class.Rd
man/hdpSampleChain-class.Rd
man/hdpSampleMulti-class.Rd
man/hdpState-class.Rd
man/hdp_addconparam.Rd
man/hdp_adddp.Rd
man/hdp_extract_components.Rd
man/hdp_init.Rd
man/hdp_multi_chain.Rd
man/hdp_p.Rd
man/hdp_posterior.Rd
man/hdp_prior_init.Rd
man/hdp_quick_init.Rd
man/hdp_setdata.Rd
man/luad_multi.Rd
man/mut_count.Rd
man/mut_example_multi.Rd
man/numcomp.Rd
man/plotchain.Rd
man/plotcomp.Rd
man/prop.ex.Rd
src/R-base.c
src/R-base.h
src/R-conparam.c
src/R-conparam.h
src/R-dp.c
src/R-dp.h
src/R-hdp.c
src/R-hdp.h
src/R-hdpMultinomial_iterate.c
src/R-hdpMultinomial_iterate.h
src/R-multinomial.c
src/R-multinomial.h
src/R-utils.c
src/R-utils.h
src/randutils.c
src/randutils.h
tests/testthat.R
tests/testthat/test_codestyle.R
vignettes/general.Rmd
vignettes/mutation_signatures.Rmd
