Description Usage Arguments Methods (by generic) Slots
hdpState class for a Hierarchical Dirichlet Process in one state
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 | ## S4 method for signature 'hdpState'
as.list(x, ...)
## S4 method for signature 'hdpState'
numdp(x, ...)
## S4 method for signature 'hdpState'
numconparam(x, ...)
## S4 method for signature 'hdpState'
base(x, ...)
## S4 method for signature 'hdpState'
conparam(x, ...)
## S4 method for signature 'hdpState'
dp(x, ...)
## S4 method for signature 'hdpState'
dpstate(x, ...)
## S4 method for signature 'hdpState'
ppindex(x, ...)
## S4 method for signature 'hdpState'
cpindex(x, ...)
## S4 method for signature 'hdpState'
numcateg(x, ...)
## S4 method for signature 'hdpState'
base_params(x, ...)
## S4 method for signature 'hdpState'
activating_seed(x, ...)
## S4 method for signature 'hdpState'
pseudoDP(x, ...)
|
x |
Object of class hdpState |
... |
unused |
as.list
: Convert to list class
numdp
: Get number of DPs
numconparam
: Get number of concentration parameters
base
: Get base distribution
conparam
: Get list of concentration parameters
dp
: Get list of DP nodes
dpstate
: Get state of every DP
ppindex
: Get parent process index of every DP
cpindex
: Get concentration parameter index of every DP
numcateg
: Get number of data categories
base_params
: Get parameters of the base Dirichlet distribution (like psuedocounts across categories).
activating_seed
: Get seed used to initialse clustering
pseudoDP
: Get index of frozen pseudo-data DP nodes for prior info
(only if initialised via hdp_prior_init)
numdp
number of DP nodes in the hierarchical Dirichlet Process
numconparam
number of concentration parameters
base
base distribution (hdpBase object)
conparam
concentration parameters (list of hdpConparam objects)
dp
DP nodes (list of hdpDP objects)
dpstate
state of DP nodes for posterior sampling process: active (2), frozen (1), or heldout (0)
ppindex
parent node index for each DP
cpindex
concentration parameter index for each DP
ttindex
DP index of those sharing a concentration parameter
initcc
number of initial clusters
seed_activate
random seed used to initiate cluster membership
pseudoDP
(Optional) index of pseudodata nodes (only if initialised via hdp_prior_init)
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