comp_categ_counts | Get sample vs category counts for each component |
comp_categ_distn | Get mean distribution over data categories for each component |
comp_cos_merge | Get cos.merge setting |
comp_dp_counts | Get sample vs component counts for each DP |
comp_dp_distn | Get mean distribution over components for each DP |
cull_posterior_samples | Cull early posterior samples from a hdpSampleChain object |
dp_activate | Activate DP nodes |
dp_freeze | Freeze DP nodes |
example_data_hdp | Fake categorical count data |
example_data_hdp_prior | Fake categorical count data with priors |
example_known_priors | Example known priors |
hdp_addconparam | Add concentration parameters to a hdpState object |
hdp_adddp | Add DPs to a hdpState object |
hdpBase-class | hdpBase class for the base distribution |
hdpConparam-class | hdpConparam class for the DP concentration parameter/s |
hdpDP-class | hdpDP class for a DP node |
hdp_extract_components | Extract major components from the raw clusters |
hdp_init | Initialise a hdpState object |
hdp_multi_chain | Gather multiple independent posterior sampling chains for the... |
hdp_p | HDP posterior samples on example data with priors |
hdp_posterior | Posterior sampling chain across activated DPs. |
hdp_prior_init | Initialise a HDP structure incorporating prior knowledge |
hdp_quick_init | Initialise a simple, default HDP structure |
hdpSampleChain-class | hdpSampleChain class for posterior samples off one MCMC chain |
hdpSampleMulti-class | hdpSampleMulti class for multiple independent hdpSampleChain... |
hdp_setdata | Assign data to DP nodes in a hdpState object |
hdpState-class | hdpState class for a Hierarchical Dirichlet Process in one... |
luad_multi | Pposterior sampling chains on lung data, conditioned on prior... |
mut_count | Cancer mutation count data |
mut_example_multi | Posterior sampling chains with cancer mutation data |
numcomp | Get number of extracted components |
plotchain | Diagnostic plots for HDP posterior sampling chain |
plotcomp | Plot extracted components |
prop.ex | Get proportion of dataset explained (on average) |
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