analyze_dataset: analyze_dataset: Basically performs preprocessing and then...

In nignatiadis/ihwPaper: Reproduce figures in IHW paper

Description

analyze_dataset: Basically performs preprocessing and then returns analyzed RNASeq dataset (diff. expression) , i.e. the DESeq2 result whose p-values and baseMean statistics can then be used with IHW

Usage

analyze_dataset(dataset = c("airway", "bottomly", "hammer"), res = TRUE)

Arguments

dataset	Character, name of dataset to be preprocessed, only 3 choices currently available ("airway","bottomly","hammer")
res	(default TRUE): return result table, rather than DESeq2 object

Value

Preprocessed dataset

Examples

bottomly <- analyze_dataset("bottomly")

nignatiadis/ihwPaper documentation built on Jan. 18, 2021, 3:13 p.m.