| Global functions | |
|---|---|
| BinCounts | Man page | 
| CreateSpliceJunctionTable | Man page | 
| GetAlignmentStatistics | Man page | 
| GetBedGraphRefSeqOverlaps | Man page | 
| GetCountsPerRegion | Man page | 
| GetCoverageMatrix | Man page | 
| GetHtseqSummaryStats | Man page | 
| GetNumGenesExpressed | Man page | 
| GetPileUpPerGene | Man page | 
| GetTranscriptomeCoverage | Man page | 
| GetrRNAStatistics | Man page | 
| OverlapEditSites | Man page | 
| SummarizeUniqueReads | Man page | 
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