GetAlignmentStatistics: Get a summary of alignment statistics for an aligned bam file...
In njmadrid/RNAseqQuality: Provides a set of functions for summarizing the quality of RNA-seq data.
Description
Usage
Arguments
Value
Author(s)
Examples
Description
Get a summary of alignment statistics for an aligned bam file as defined by samtools idxstats.
Usage
1
GetAlignmentStatistics(BamFilePath)
Arguments
BamFilePath
location of aligned bam file. Corresponding bai index file must be in the same directory.
Value
A data.frame of a summary of alignment statistics for an aligned bam file as defined by samtools idxstats.
Author(s)
Nathaniel J. Madrid, Jason Byars
Examples
1
2
BamFilePaths <- dir(path="/home/ubuntu/Projects/RNAseqPackage/bams", pattern=".*.bam$", full.names=T)
AlignmentStatsDF = GetAlignmentStatistics(BamFilePaths[1])
njmadrid/RNAseqQuality documentation built on May 20, 2019, 3:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Author(s) Examples
Description
Get a summary of alignment statistics for an aligned bam file as defined by samtools idxstats.
Usage
1 | GetAlignmentStatistics(BamFilePath)
|
Arguments
BamFilePath |
location of aligned bam file. Corresponding bai index file must be in the same directory. |
Value
A data.frame of a summary of alignment statistics for an aligned bam file as defined by samtools idxstats.
Author(s)
Nathaniel J. Madrid, Jason Byars
Examples
1 2 | BamFilePaths <- dir(path="/home/ubuntu/Projects/RNAseqPackage/bams", pattern=".*.bam$", full.names=T)
AlignmentStatsDF = GetAlignmentStatistics(BamFilePaths[1])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.