Anova_info: ANOVA Test for each gene

In nkoneill/mMuSiC: Deconvolution with Target and Reference Difference Extending MuSiC Version: 0.2.0

ANOVA Test for each gene

Description

This function is to test the two-way significance of cell type specific expression cross samples

Usage

Anova_info(
  eset,
  non.zero = TRUE,
  markers = NULL,
  clusters,
  samples,
  select.ct = NULL,
  num.info = 25,
  ...
)

Arguments

eset	single cell ExpressionSet
non.zero	logical, default as TRUE. If TRUE, we only use gene that have non-zero expression
markers	vector of characters, default as NULL. If NULL, use all genes in eset
clusters	character, the name of phenoData used as clusters
samples	character, the name of phenoData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x
num.info	numeric, number of selected gene for each cell type. Default at 25

Value

a list of * F statistics of samples * F statistics of clusters, * F statistics of two-way anova * selected informative genes: high F statictis for clusters compare to samples

nkoneill/mMuSiC documentation built on Oct. 25, 2023, 2:39 a.m.