music_Sigma: Cross-subject Varirance of Relative Abundance

In nkoneill/mMuSiC: Deconvolution with Target and Reference Difference Extending MuSiC Version: 0.2.0

Cross-subject Varirance of Relative Abundance

Description

This function is for calculating the cross-subject variance of relative abundance for selected cell types.

Usage

music_Sigma(x, non.zero, markers, clusters, samples, select.ct)

Arguments

x	ExpressionSet, single cell dataset
non.zero	logical, if true, remove all gene with zero expression
markers	vector or list of gene names
clusters	character, the phenoData used as clusters
samples	character,the phenoData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x

Value

gene by cell type matrix of variance

nkoneill/mMuSiC documentation built on Oct. 25, 2023, 2:39 a.m.