bulk_construct: Construct artificial bulk tissue expression from single cell...

In nkoneill/mMuSiC: Deconvolution with Target and Reference Difference Extending MuSiC Version: 0.2.0

Construct artificial bulk tissue expression from single cell data

Description

Artificial bulk tissue expression is generated by adding gene expressions of all cells from same subjects.

Usage

bulk_construct(eset, clusters, samples, select.ct = NULL)

Arguments

eset	ExpressionSet, single cell dataset
clusters	character, the phenoData used as clusters
samples	character, the phenoData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x. Otherwise, only cells of selected cell types will be used for construction.

Value

ExpressionSet of constructed bulk tissue, matrix of cell number in each cluster by subject

nkoneill/mMuSiC documentation built on Oct. 25, 2023, 2:39 a.m.