Files in nkurniansyah/Olivia
RNA-seq Analysis
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
Olivia.Rproj
R/Plots.R
R/apply_filter.R
R/compute_empirical_pvalue.R
R/example_dataset.R
R/filter_by_genes.R
R/lm_count_mat.R
R/log_transform.R
R/mult_lm_count_mat.R
R/normalization.R
R/permutation_lm_count_mat.R
R/residual_permutation_function.R
README.md
data/ENSG00000000003.rda
data/phenotype.rda
data/rnaseq_count_matrix.rda
figure/unnamed-chunk-37-1.png
figure/unnamed-chunk-38-1.png
figure/unnamed-chunk-40-1.png
figure/unnamed-chunk-41-1.png
figure/unnamed-chunk-46-1.png
figure/unnamed-chunk-47-1.png
man/ENSG00000000003.Rd
man/apply_filters.Rd
man/compute_quantile_empirical_pvalues.Rd
man/filter_by_genes.Rd
man/lm_count_mat.Rd
man/lm_count_mat_emp_pval.Rd
man/lm_count_mat_perm_pval.Rd
man/lm_count_mat_permute.Rd
man/lm_mult_count_mat_emp_pval.Rd
man/log_add_0.5.Rd
man/log_add_min.Rd
man/log_replace_half_min.Rd
man/log_transform_count.Rd
man/median_normalization.Rd
man/mult_lm_count_mat.Rd
man/permutation_pvalues.Rd
man/permute_resids_trait.Rd
man/permute_resids_trait_cor.Rd
man/phenotype.Rd
man/residual_plot.Rd
man/rnaseq_count_matrix.Rd
man/summarize_phenotypes.Rd
man/summary_phenotype.Rd
man/violin_plot.Rd
man/volcano_plot.Rd
tests/.DS_Store
tests/testthat.R
tests/testthat/generate_data.R
tests/testthat/test.R
tests/testthat/test_apply_filter.R
tests/testthat/test_compute_empirical_pvalue.R
tests/testthat/test_filter_by_genes.R
tests/testthat/test_log_transform.R
tests/testthat/test_normalization.R
tests/testthat/test_residual_permutation_function.R
vignettes/.gitignore
vignettes/Tutorial.Rmd
vignettes/Tutorial.pdf
