permute_resids_trait: Residual permutation

In nkurniansyah/Olivia: RNA-seq Analysis

Residual permutation

Description

Residual permutation

Usage

permute_resids_trait(
  pheno,
  trait,
  covariates_string,
  seed = NULL,
  outcome_type = "continuous"
)

Arguments

pheno	A data.frame of phenotypes/variables
trait	A continuous/binary variable to permute while preserving association with covariates
covariates_string	Covariates to adjust for, as a string used in regression model
seed	Random seed
outcome_type	continuous and binary, default is continuous

Value

Vector of trait values after residual permuted

Examples

data(phenotype)
trait<-"Trait.1"; covars="Age+Sex"
permute_resids_trait(pheno=phenotype, trait=trait,
                     covariates_string=covars, 
                     seed = NULL, outcome_type="continuous")

nkurniansyah/Olivia documentation built on July 29, 2023, 9:10 a.m.