config_tab: Example config table for a import of a simulated 2D-TPP cell...

In nkurzaw/TPP2D: Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)

Example config table for a import of a simulated 2D-TPP cell extract dataset

Description

Config table fot import of simulated example dataset obtained by 2D-TPP experiments for analysis by the TPP2D-package. It's a data frame with the columns "Compound" describing the compound used for the assay, "Experiment" listing MS experiment ids of the separate runs (typically comprising two multiplexed adjacent temperature), "Temperature": the temperature used for a given sub-experimet, the respective TMT labels "126"-"131L", RefCol referring to the label used as a reference label for computing relative fold changes (usually the label used for the control treatment). Please note that when the data is not supplied as a list of already imported data frames the config table for the import function should be a path to an txt, csv or xlsx file containing an additional column "Path" listing for each row the respective path to a searched protein output file.

Usage

data("config_tab")

Format

"Compound" describing the compound used for the assay, "Experiment" listing MS experiment ids of the separate runs (typically comprising two multiplexed adjacent temperature), "Temperature": the temperature used for a given sub-experimet, the respective TMT labels "126"-"131L", RefCol referring to the label used as a reference label for computing relative fold changes (usually the label used for the control treatment).

nkurzaw/TPP2D documentation built on May 9, 2023, 10:04 a.m.