Man pages for nlmixrdevelopment/nlmixr
Nonlinear Mixed Effects Models in Population Pharmacokinetics and Pharmacodynamics

addCwresAdd CWRES
addNpdeNPDE calculation for nlmixr
as.foceiConvert fit to FOCEi style fit
as.nlmeReturn composite nlme/focei to nlme
as.saemReturn composite saem/focei to saem
Bolus_1CPTBolus_1CPT - 1 Compartment Model Simulated Data from ACOP...
Bolus_1CPTMM1 Compartment Model w/ Michelis Menton Elimination
Bolus_2CPT2 Compartment Model
Bolus_2CPTMM2 Compartment Model with Michelis Menton Clearance
bootdataBootstrap data
calcCovCalculate gnlmm variance-covariance matrix of fixed effects
cholSEGeneralized Cholesky Matrix Decomposition
configsaemConfigure an SAEM model
constructLinCmtConstruct RxODE linCmt function
coxBoxCox Box transformation
dot-collectWarningsCollect warnings and just warn once.
dynmodelFit a non-population dynamic model
dynmodel.mcmcFit a non-population dynamic model using mcmc
foceiControlControl Options for FOCEi
focei.etaGet the FOCEi theta or eta specification for model.
foceiFitFOCEi fit
foceiFitCpp_Fit/Evaulate FOCEi
focei.thetaGet the FOCEi theta specification for the model
frwd_selectionForward covariate selection for nlme-base non-linear mixed...
gauss.quadSets nodes and weigts of Gauss-Hermite quadrature
gen_saem_user_fnGenerate an SAEM model
getOMEGACalculate gnlmm variance-covariance matrix of random effects
gnlmmFit a generalized nonlinear mixed-effect model
Infusion_1CPTInfusion_1CPT - 1 Compartment Model Simulated Data from ACOP...
ininlmixr ini block handling
invgaussianInverse Guassian absorption model
lincmtParameters for a linear compartment model for SAEM
lin_cmtconcentrations from a linear compartment model
metaboliteParent/Metabolite dataset
modelnlmixr model block
nlme_gofGOF plots for nlme-based mixed-effect models
nlme_lin_cmptFit nlme-based linear compartment mixed-effect model using...
nlmeModListAccess the model list information for nlmixr's nlme user...
nlme_odeFit nlme-based mixed-effect model using ODE implementation
nlmixrnlmixr fits population PK and PKPD non-linear mixed effects...
nlmixrAugPredAugmented Prediction for nlmixr fit
nlmixrBoundsExtract the Nlmixr bound information from a function.
nlmixrBounds.eta.namesGet ETA names
nlmixrBounds.focei.upper.lowerGet upper/lower/names for THETAs
nlmixrDataConvert/Format the data appropriately for nlmixr
nlmixrfindLhsFind the assignments in R expression
nlmixr_fitFit a nlmixr model
nlmixrForgetClear memoise cache for nlmixr
nlmixrLogoMessages the nlmixr logo...
nlmixrPredPredict a nlmixr solved system
nlmixrPrintPrint x using the message facility
nlmixrSimSimulate a nlmixr solved system
nlmixrUIPrepares the UI function and returns a list.
nlmixrUI.focei.fixedGet parameters that are fixed
nlmixrUI.focei.initsGet the FOCEi initializations
nlmixrUILinCmtBuild linear solved information based on defined parameters.
nlmixrUI.nlmefunCreate the nlme parameter transform function from the UI...
nlmixrUI.nlme.specsCreate the nlme specs list for nlmixr nlme solving
nlmixrUI.nlme.varGet the variance for the nlme fit process based on UI
nlmixrUI.rxode.predReturn RxODE model with predictions appended
nlmixrUI.saem.aresGet initial estimate for ares SAEM.
nlmixrUI.saem.bresGet initial estimate for bres SAEM.
nlmixrUI.saem.distributionGet SAEM distribution
nlmixrUI.saem.eta.transGet the eta->eta.trans for SAEM
nlmixrUI.saem.fitGenerate user function.
nlmixrUI.saem.fixedGet parameters that are fixed for SAEM
nlmixrUI.saem.initGet saem initilization list
nlmixrUI.saem.init.omegaSAEM's init$omega
nlmixrUI.saem.init.thetaGenerate SAEM initial estimates for THETA.
nlmixrUI.saem.log.etaGet model$log.eta for SAEM
nlmixrUI.saem.modelGenerate SAEM model list
nlmixrUI.saem.model.omegaGet the SAEM model Omega
nlmixrUI.saem.res.modGet the SAEM model$res.mod code
nlmixrUI.saem.res.nameGet error names for SAEM
nlmixrUI.saem.theta.nameGet THETA names for nlmixr's SAEM
nlmixrUI.theta.parsGet the Parameter function with THETA/ETAs defined
nlmixrValidateValidate nlmixr
nlmixrVersionDispaly nlmixr's version
nmDataConvertConvert NONMEM/Monolix data to RxODE/nlmixr style data
nmsimplexNelder-Mead of simplex search
nmxIncludeGet a list of directories for inclusion
Oral_1CPTOral_1CPT - 1 Compartment Model with Oral Absorption...
plot.dyn.IDPlot of a non-population dynamic model fit
plot.dyn.mcmcPlot of a non-population dynamic model fit using mcmc
plot.nlmixrFitDataPlot a nlmixr data object
plot.saemFitPlot an SAEM model fit
predictionPrediction after a gnlmm fit
print.dyn.IDPrint a non-population dynamic model fit object
print.dyn.mcmcSummary of a non-population dynamic model fit using mcmc
print.gnlmm.fitPrint a gnlmm fit
print.nlmixrUIPrint UI function
print.saemFitPrint an SAEM model fit summary
pumpPump failure example dataset
ratsPregnant Rat Diet Experiment
reexportsObjects exported from other packages
residuals.nlmixrFitDataExtract residuals from the FOCEI fit
saem.cleanupCleanup saem_fit environment by removing dll after the object...
saemControlControl Options for SAEM
saem.fitFit an SAEM model
setOfvSet Objective function type for a nlmixr object
sqrtmReturn the square root of general square matrix A
summary.dyn.IDSummary of a non-population dynamic model fit
summary.dyn.mcmcSummary of a non-population dynamic model fit using mcmc
summary.saemFitPrint an SAEM model fit summary
tableControlOutput table/data.frame options
theo_mdMultiple dose Theophiline PK data
theo_sdMultiple dose Theophiline PK data
traceplotProduce trace-plot for fit if applicable
VarCorr.nlmixrNlmeReturn VarCorr for nlmixr nlme
vpcVpc function for nlmixr
vpc_nlmixr_nlmeVisual predictive check (VPC) for nlmixr nlme objects
vpc_saemFitVPC for nlmixr saemFit objects
vpc_uiVPC based on ui model
Wang2007Simulated Data Set for comparing objective functions
yeoJohnsonYeo-Johnson Transformation
nlmixrdevelopment/nlmixr documentation built on Dec. 5, 2018, 9:21 p.m.