Files in nlmixrdevelopment/nlmixr
Nonlinear Mixed Effects Models in Population PK/PD

.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/covr.yaml
.github/workflows/pkgdown.yaml
.gitignore
CheatSheet_nlmixr.pdf
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md PosterACoP2016.pdf PosterACoP2017.pdf PosterPAGE2017.pdf R/000.R R/RcppExports.R R/RcppManualExports.R R/autocovar.R R/bootstrap.R R/bounds.R R/broom.R R/complete.R R/cov.R R/data_Wang2007.R R/data_bolus_1CPT.R R/data_bolus_1CPTMM.R R/data_bolus_2CPT.R R/data_bolus_2CPTMM.R R/data_infusion_1CPT.R R/data_oral_1CPT.R R/data_pheno_sd.R R/data_rats.R R/data_theo_md.R R/data_theo_sd.R R/data_warfarin.R R/dynmodel.R R/foceiFit.R R/gauss.quad.R R/gnlmm.R R/gnlmm2.R R/huxtable.R R/instant.stan.extension.R R/invgaussian.R R/md5.R R/metabolite.R R/nlme_fit.R R/nlme_fit_gen.R R/nlmixr.R R/nlmixrGrad.R R/npde.R R/ofv.R R/pkpars.R R/plot.R R/precondition.R R/print.R R/pump.R R/reexports.R R/resid.R R/rxPipeline.R R/saem_fit.R R/saem_fit_aux.R R/simulate.R R/sourceCppFunction.R R/ui.R R/utils.R R/validate.R R/vpc.R R/vpc.nlme.R R/vpc.saemFit.R R/vpc.ui.R README.Rmd README.md
_pkgdown.yml
build/MUI_EXTRAPAGES.nsh
build/Oxygen-Icons.org-Oxygen-Apps-system-software-update.ico
build/icon_red.ico
build/install.R
build/installation-notes.rtf
build/nlmixr-header.bmp
build/nlmixr-header.png
build/nlmixr-welcome.bmp
build/nlmixr-welcome.png
build/nsis.R build/refresh.R
build/shinyMixR.ico
build/test_install.R build/update.R
build/update.nsddef
build/update.nsdinc
cleanup
cleanup.win
codecov.yml
configure
configure.win
cran-comments.md
data/Bolus_1CPT.rda
data/Bolus_1CPTMM.rda
data/Bolus_2CPT.rda
data/Bolus_2CPTMM.rda
data/Infusion_1CPT.rda
data/Oral_1CPT.rda
data/Wang2007.rda
data/invgaussian.rda
data/metabolite.rda
data/pheno_sd.rda
data/pump.rda
data/rats.rda
data/theo_md.rda
data/theo_sd.rda
data/warfarin.rda
inst/CITATION
inst/COPYRIGHT
inst/THANKS
inst/TODOs.txt
inst/include/generic_ode_interface_template.txt
inst/include/generic_ode_interface_template_cov.txt
inst/include/lin_cmt.hpp
inst/include/nlmixr_types.h
inst/nlmixr-template.docx
inst/quadrule.diff
inst/revision.txt
inst/tools/workaround.R
logo.png
man-roxygen/uif.R man-roxygen/w2007.R man/Bolus_1CPT.Rd man/Bolus_1CPTMM.Rd man/Bolus_2CPT.Rd man/Bolus_2CPTMM.Rd man/Infusion_1CPT.Rd man/Oral_1CPT.Rd man/VarCorr.nlmixrNlme.Rd man/Wang2007.Rd man/addCovMultiple.Rd man/addCovVar.Rd man/addCovariate.Rd man/addCwres.Rd man/addNpde.Rd man/addTable.Rd man/as.dynmodel.Rd man/as.focei.Rd man/as.focei.dynmodel.Rd man/as.nlme.Rd man/as.saem.Rd man/backwardSearch.Rd man/bootdata.Rd man/bootplot.Rd man/bootstrapFit.Rd man/boxCox.Rd man/calc.2LL.Rd man/calc.COV.Rd man/calcCov.Rd man/cholSE.Rd man/configsaem.Rd man/covarSearchAuto.Rd man/dot-nmGetData.Rd man/dynmodel.Rd man/dynmodel.mcmc.Rd man/dynmodelControl.Rd man/focei.eta.Rd man/focei.theta.Rd man/foceiControl.Rd man/foceiFit.Rd man/foceiFitCpp_.Rd man/forwardSearch.Rd man/frwd_selection.Rd man/gauss.quad.Rd man/gen_saem_user_fn.Rd man/getOMEGA.Rd man/gnlmm.Rd man/gof.Rd man/ini.Rd man/initializeCovars.Rd man/instant.stan.extension.Rd man/invgaussian.Rd man/lin_cmt.Rd man/makeDummies.Rd man/makeHockeyStick.Rd man/metabolite.Rd man/model.Rd man/nlmeModList.Rd man/nlme_gof.Rd man/nlme_lin_cmpt.Rd man/nlme_ode.Rd man/nlmixr.Rd man/nlmixrAugPred.Rd man/nlmixrBounds.Rd man/nlmixrBounds.eta.names.Rd man/nlmixrBounds.focei.upper.lower.Rd man/nlmixrBoundsParser.Rd man/nlmixrData.Rd man/nlmixrDynmodelConvert.Rd man/nlmixrEst.Rd man/nlmixrGill83.Rd man/nlmixrGradFun.Rd man/nlmixrHess.Rd man/nlmixrLogo.Rd man/nlmixrPosthoc.Rd man/nlmixrPred.Rd man/nlmixrPrint.Rd man/nlmixrSim.Rd man/nlmixrTest.Rd man/nlmixrUI.Rd man/nlmixrUI.dynmodelfun.Rd man/nlmixrUI.dynmodelfun2.Rd man/nlmixrUI.focei.fixed.Rd man/nlmixrUI.focei.inits.Rd man/nlmixrUI.nlme.specs.Rd man/nlmixrUI.nlme.var.Rd man/nlmixrUI.nlmefun.Rd man/nlmixrUI.rxode.pred.Rd man/nlmixrUI.saem.ares.Rd man/nlmixrUI.saem.bres.Rd man/nlmixrUI.saem.cres.Rd man/nlmixrUI.saem.distribution.Rd man/nlmixrUI.saem.eta.trans.Rd man/nlmixrUI.saem.fit.Rd man/nlmixrUI.saem.fixed.Rd man/nlmixrUI.saem.init.Rd man/nlmixrUI.saem.init.omega.Rd man/nlmixrUI.saem.init.theta.Rd man/nlmixrUI.saem.log.eta.Rd man/nlmixrUI.saem.model.Rd man/nlmixrUI.saem.model.omega.Rd man/nlmixrUI.saem.res.mod.Rd man/nlmixrUI.saem.res.name.Rd man/nlmixrUI.saem.rx1.Rd man/nlmixrUI.saem.theta.name.Rd man/nlmixrUI.theta.pars.Rd man/nlmixrValidate.Rd man/nlmixrVersion.Rd man/nlmixr_fit.Rd man/nlmixrfindLhs.Rd man/nmDataConvert.Rd man/nmDocx.Rd man/nmLst.Rd man/nmsimplex.Rd man/ofv.Rd man/performNorm.Rd man/pheno_sd.Rd man/plot.dyn.mcmc.Rd man/plot.nlmixrFitData.Rd man/plot.saemFit.Rd man/preCondInv.Rd man/preconditionFit.Rd man/prediction.Rd man/print.dyn.ID.Rd man/print.dyn.mcmc.Rd man/print.gnlmm.fit.Rd man/print.nlmixrUI.Rd man/print.saemFit.Rd man/pump.Rd man/rats.Rd man/reexports.Rd man/removeCovMultiple.Rd man/removeCovVar.Rd man/removeCovariate.Rd man/residuals.nlmixrFitData.Rd man/saem.fit.Rd man/saemControl.Rd man/setCov.Rd man/setOfv.Rd man/sqrtm.Rd man/summary.dyn.ID.Rd man/summary.saemFit.Rd man/tableControl.Rd man/theo_md.Rd man/theo_sd.Rd man/traceplot.Rd man/vpc.Rd man/vpc_nlmixr_nlme.Rd man/vpc_saemFit.Rd man/vpc_ui.Rd man/warfarin.Rd
pkgdown/favicon/apple-touch-icon-120x120.png
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pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
src/Makevars.in
src/PKPDLib_WW.h
src/RcppExportMod.cpp
src/RcppExports.cpp
src/armahead.h
src/censResid.cpp
src/censResid.h
src/cholse.cpp
src/cwres.cpp
src/cwres.h
src/evaluate.h
src/init.c
src/inner.cpp
src/ires.cpp
src/ires.h
src/lbfgsR.c
src/lin_cmt.h
src/merge3.c
src/neldermead.cpp
src/npde.cpp
src/npde.h
src/ode_cmt1.cpp
src/res.cpp
src/res.h
src/resid.cpp
src/rprintf.c
src/saem.cpp
src/shrink.cpp
src/shrink.h
src/slice.cpp
src/utilc.c
src/utilc.h
tests/testthat.R
tests/testthat/Infusion_1CPT.csv
tests/testthat/Infusion_1CPTMM.csv
tests/testthat/Infusion_2CPT.csv
tests/testthat/Infusion_2CPTMM.csv
tests/testthat/Oral_1CPTMM.csv
tests/testthat/Oral_2CPT.csv
tests/testthat/Oral_2CPTMM.csv
tests/testthat/fn.txt
tests/testthat/out.focei.prop.rds
tests/testthat/test-281.R tests/testthat/test-307.R tests/testthat/test-autocovar.R tests/testthat/test-back-transform.R tests/testthat/test-bootstrap.R tests/testthat/test-bounds.R tests/testthat/test-broom.R tests/testthat/test-cov-focei.R tests/testthat/test-dynmodel.R tests/testthat/test-focei-cens.R tests/testthat/test-focei-inner.R tests/testthat/test-focei-wang2007.R tests/testthat/test-issue-161.R tests/testthat/test-issue-164.R tests/testthat/test-issue-169.R tests/testthat/test-issue-172.R tests/testthat/test-issue-413.R tests/testthat/test-issue-429.R tests/testthat/test-issue-501.R tests/testthat/test-issue-502.R tests/testthat/test-issue-503.R tests/testthat/test-keep.R tests/testthat/test-mixed-pk-ode.R tests/testthat/test-multiple-endpoint.R tests/testthat/test-nimo-ui.R tests/testthat/test-npde.R tests/testthat/test-piping.R tests/testthat/test-precondition.R tests/testthat/test-saem-aic.R tests/testthat/test-saem-cov-parsing.R tests/testthat/test-saem-theo_sd.R
tests/testthat/test-saem-theo_sd.qs
tests/testthat/test-sens-fd.R tests/testthat/test-table-cmt.R tests/testthat/test-ui-bad-models.R tests/testthat/test-ui-good-models.R tests/testthat/test-ui-pred-err.R tests/testthat/test-ui-saem.R
vignettes/Mavoglurant_A2121_nmpk.csv
vignettes/Simulated_WBC_pacl_ddmore_samePK_nlmixr.csv
vignettes/addingCovariances.Rmd vignettes/broom.Rmd vignettes/censoring.Rmd
vignettes/logo.png
vignettes/mavoglurant.Rmd vignettes/modelPiping.Rmd vignettes/multiple-endpoints.Rmd vignettes/nimo.Rmd
vignettes/nimoData.rda
vignettes/nimo_fig1.PNG
vignettes/nlmixr_report.docx
vignettes/nlmixr_report.pdf
vignettes/pbpk.png
vignettes/pheno.docx
vignettes/residualErrors.Rmd
vignettes/residualErrors.csv
vignettes/running_nlmixr.Rmd vignettes/wbc.Rmd vignettes/xgxr-nlmixr-ggpmx.Rmd
nlmixrdevelopment/nlmixr documentation built on Aug. 22, 2023, 2:16 p.m.