API for nmah/CellScore
Tool for Evaluation of Cell Identity from Transcription Profiles
| Global functions | |
|---|---|
| .calculateCentroids | Source code |
| .calculateFractions | Source code |
| .calculateGroupOnOff | Source code |
| .calculateIndOnOff | Source code |
| .colourMapping | Source code |
| .concatenateByRows | Source code |
| .cosineScore | Source code |
| .doDensityPlot | Source code |
| .doPlot | Source code |
| .doRugPlot | Source code |
| .filterPheno | Source code |
| .filterTransitions | Source code |
| .formatOnOffMarkers | Source code |
| .formatOnOffScores | Source code |
| .fractionScore | Source code |
| .getAllCosine | Source code |
| .getMainColours | Source code |
| .getOnOffMarkersByGroup | Source code |
| .group2ColourSymbolMapping | Source code |
| .stopIfCantCoerceToSummarizedExperiment | Source code |
| .stopIfNotBinaryMatrix | Source code |
| .stopIfNotDataFrame | Source code |
| .stopIfNotExpressionSet | Source code |
| .stopIfNotNumeric0to1 | Source code |
| .stopIfNotSymetricMatrix0to1 | Source code |
| .subsetCallsByGroup | Source code |
| .subsetSymetricMatrix | Source code |
| .zscore | Source code |
| BarplotOnOff | Man page Source code |
| BoxplotCellScore | Man page Source code |
| CellScore | Man page Source code |
| CellScoreReport | Man page Source code |
| CosineSimScore | Man page Source code |
| OnOff | Man page Source code |
| PcaStandards | Man page Source code |
| PlotCosineSimHeatmap | Man page Source code |
| RugplotCellScore | Man page Source code |
| ScatterplotCellScoreComponents | Man page Source code |
| extractTransitions | Man page Source code |
| heatmapOnOffMarkers | Man page Source code |
| rugplotDonorTargetTest | Man page Source code |
| scatterplotDonorTargetTest | Man page Source code |
