Man pages for noaa-garfo/discaRd
Cochran bycatch estimation
| add_nobs | add_nobs add number of observed subtrips according to the... |
| assign_discard_source | Assign Discard Source this is an internal function that... |
| assign_strata | Assign Strata uses text input to coalesce variables to a... |
| bootr.strat | Bootstrap discard rate with stratification bootstraps Cochran... |
| cochran.calc.ss | Estimates Cochran discard rate and required sample sizes |
| cochran.trans.calc | Estimate the in-season cumulative discard with a transition... |
| discard_generic | discard_generic: Calculate discards for January fishing year... |
| discard_generic_diagnostic | discard_generic_diagnostic: Calculate discards for January... |
| discard_groundfish | discard_groundfish: Calculate groundfish discards |
| discard_groundfish_diagnostic | discard_groundfish_diagnostic: Calculate groundfish discards:... |
| discard_herring | discard_herring: Calculate discards for January fishing year... |
| discard_herring_diagnostic | discard_herring: Calculate discards for January fishing year... |
| eflalo | eflalo dataset from VMSTOOLS |
| get_broad_stock_rate | Get Broad Stock Rate This function is a special case of... |
| get.bydat | Get Fishery data, specify bycatch species |
| get_catch_obs | Get Catch OBS data |
| get_catch_obs_diag | Get Catch OBS data |
| get.cochran.ss.by.strat | Estimate discard rates (and other attributes) by strata |
| get_covrow | Get covrow Get total number of trips (N) and observed trips... |
| get_covrow_bg | Alt version get_covrow.R |
| get_date_range | Get Date Range get date range for particular type of fishing... |
| get_obs_disc_vals | Get Observed Discards |
| get.trans.rate | TRANSITION RATE |
| get.weighted.cv | Required Samples across a CV range |
| grapes-not-in-grapes | notin |
| make_assumed_rate | Make an assumed rate |
| make_bdat_focal | Get Observed trips for discard year This function utilizes... |
| make.obs.flag.dat | Modify eflalo for Cochran estimation |
| make_strata_desc | make_strata_desc |
| parse_discard_diag | Parse Discard Table for Diagnostics Parses discard results,... |
| run_discard | Run discaRd end to end |
| scallop_subroutine | Groundfish discards on scallop trips This function oeprates... |
| scallop_subroutine_diag | Groundfish discards on scallop trips This function oeprates... |
| setup.parallel | Setup parallel |
| summarise_single_discard_row | Reduce the ddat_focal dataframe for inputting into discards... |
| unite_by_source | Unite by source This function gets a 'STRATA_USED_DESC' for a... |
| vary.bigN | Vary N (# total commercial trips) |
| vary.n | Vary n (# observed trips) |
