Man pages for nodrogluap/gumshoe
Supplemental Statistical Tests and Utilities for Kallisto/Sleuth RNASeq Analysis
| design_filter | Filter low expressed transcripts by taking into account the... |
| ensembl_to_id | Convert a given list of ensemble transcript id's into... |
| fdr_cutoff | Retrieve all target id's for a given data frame with a FDR... |
| filtered_scaled_transcript_counts | Return the scaled transcript counts for a set of genes. |
| heatmap_plot | Generate a isoform level heat map. Can only show a maximum of... |
| isoform_boxplot | Generate a box plot from kruskal-wallis results with... |
| self_plot_pca | Generate a PCA plot from a sleuth object with user-selected... |
| sleuth_interpret | Automate the running of sleuth_prep and sleuth_fit on all... |
| sleuth_kruskal_wallis | Run a Kruskal-Wallis One-Way ANOVA on non-parametric data at... |
| sleuth_model_rss | Calculate the Residual Sum of Squares of the Sleuth object's... |
| sleuth_object_result | Retrieve all results from a given Sleuth object following... |
| sleuth_prep_transcript_dosage | Add a transcript's scaled est_count value as a numeric dosage... |
| sleuth_reliable_target_ids | List all the Sleuth object 'target_id's that have at least... |
| sleuth_test_lrt | Automated function to run all possible Likewise Ratio tests... |
| sleuth_test_wt | Automated function to run all possible Wald tests on a given... |
| sleuth_u | Turn a numeric factor in a Sleuth object regression model... |
| sleuth_wilcox_pairwise | Run a Wilcox pairwise comparison for a group across... |
| spread_abundance_by | Spread abundance by a column. Take a data.frame from a sleuth... |
| volc_plot | Generate a volcano plot from a data frame containing a gene... |
