sleuth_wilcox_pairwise: Run a Wilcox pairwise comparison for a group across...

In nodrogluap/gumshoe: Supplemental Statistical Tests and Utilities for Kallisto/Sleuth RNASeq Analysis

Run a Wilcox pairwise comparison for a group across est_counts

Description

Run a Wilcox pairwise comparison for a group across est_counts

Usage

sleuth_wilcox_pairwise(data, grouping, cutoff = 0.05)

Arguments

data	An existing Sleuth object as generated by sleuth_prep() and fit by sleuth_fit()
grouping	A column name in the sample to covariate dataframe provided when running sleuth_prep / sleuth_interpret
cutoff	The p-value cutoff to be used for the letter based output

Value

Results of a pairwise Wilcox test to identify the significantly different groups given as letters, where different letters indicate significance

Examples

# Given a dataframe that contains est_counts for a particular gene and grouping information, run the Wilcox pairwise comparison of the est_counts factor between the selected group.
sleuth_kruskal_wallis(scaled_transcript_counts, "sex")

nodrogluap/gumshoe documentation built on Feb. 28, 2023, 6:15 p.m.