spread_abundance_by: Spread abundance by a column. Take a data.frame from a sleuth...

In nodrogluap/gumshoe: Supplemental Statistical Tests and Utilities for Kallisto/Sleuth RNASeq Analysis

Spread abundance by a column. Take a data.frame from a sleuth object (e.g. obs_raw) and cast it into a matrix where the rows are the target_ids and the columns are the sample ids. The values are the variable you are "spreading" on.

Description

Spread abundance by a column. Take a data.frame from a sleuth object (e.g. obs_raw) and cast it into a matrix where the rows are the target_ids and the columns are the sample ids. The values are the variable you are "spreading" on.

Usage

spread_abundance_by(abund, var, which_order)

Arguments

abund	the abundance data.frame from a sleuth object
var	a character array of length one. The variable for which to get "spread" on (e.g. "est_counts").

nodrogluap/gumshoe documentation built on Feb. 28, 2023, 6:15 p.m.