API for noemiandor/expands
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
| Global functions | |
|---|---|
| .addColumn | Source code |
| .addMissingCols | Source code |
| .assignCBSToMutation | Source code |
| .assignFPKMToMutation | Source code |
| .assignSNVsToMultipleSPs | Source code |
| .calculateHammingDistance | Source code |
| .call_rJava | Source code |
| .chooseRobustSPs | Source code |
| .collapseSimilar | Source code |
| .getAllDescendingTips_InclSelf | Source code |
| .indexOfSNVsWithin | Source code |
| .init_rJava | Source code |
| .intersect_MatlabV | Source code |
| .map2mat | Source code |
| .notifyUser | Source code |
| .onLoad | Source code |
| .oneThreadCellFrequencyDistributions | Source code |
| .plotSPPerChr | Source code |
| .plotSPPerCopyNumber | Source code |
| .plotSPPerVar | Source code |
| .propagateSNVToMultipleSPs | Source code |
| .readSNVandCBS | Source code |
| .weightedMean | Source code |
| .writeExpandsOutput | Source code |
| assignMutations | Man page Source code |
| assignQuantityToMutation | Man page Source code |
| assignQuantityToSP | Man page Source code |
| buildMultiSamplePhylo | Man page |
| buildPhylo | Man page Source code |
| cbs | Man page |
| cellfrequency_pdf | Man page Source code |
| clusterCellFrequencies | Man page Source code |
| computeCellFrequencyDistributions | Man page Source code |
| gatherEXPANDSoutput | Man page Source code |
| plotSPs | Man page Source code |
| roi | Man page |
| runExPANdS | Man page Source code |
| simulation | Man page |
| snv | Man page |
