Files in noemiandor/expands
Expanding Ploidy and Allele-Frequency on Nested Subpopulations

.DS_Store
.Rbuildignore
.classpath
.project
DESCRIPTION
LICENSE.md
NAMESPACE
NEWS.md
R/.DS_Store
R/.Rapp.history
R/Utils.R R/assignMutations.R R/assignQuantityToMutation.R R/assignQuantityToSP.R R/buildMultiSamplePhylo.R R/buildPhylo.R R/cellfrequency_pdf.R R/clusterCellFrequencies.R R/computeCellFrequencyDistributions.R R/gatherEXPANDSoutput.R R/onLoad.R R/plotSPs.R R/runExPANdS.R
R/sysdata.rda
bin/core/ParallelSubpopulations.class
bin/core/Subpopulation.class
bin/core/utils/AFtimesCopyNumber.class
bin/core/utils/Common.class
bin/core/utils/CopyNumber.class
bin/core/utils/Measurement.class
bin/core/utils/NotAValidCompositionException.class
cran-comments.md
data/.DS_Store
data/cbs.rda
data/simulation.rda
data/snv.rda
inst/.DS_Store
inst/java/.DS_Store
inst/java/expands.jar
java/.DS_Store
java/lib/commons-math3-3.0.jar
java/src/.DS_Store
java/src/core/ParallelSubpopulations.java
java/src/core/Subpopulation.java
java/src/core/utils/AFtimesCopyNumber.java
java/src/core/utils/Common.java
java/src/core/utils/CopyNumber.java
java/src/core/utils/Measurement.java
java/src/core/utils/NotAValidCompositionException.java
java/uml/EXPANDS.mdzip
java/uml/EXPANDS.mdzip.bak
java/uml/ParallelSubpopulations.tif
java/uml/expands2.tif
man/.DS_Store
man/.Rapp.history
man/assignMutations.Rd man/assignQuantityToMutation.Rd man/assignQuantityToSP.Rd man/buildMultiSamplePhylo.Rd man/buildPhylo.Rd man/cbs.Rd man/cellfrequency_pdf.Rd man/clusterCellFrequencies.Rd man/computeCellFrequencyDistributions.Rd man/gatherEXPANDSoutput.Rd man/plotSPs.Rd man/roi.Rd man/runExPANdS.Rd man/simulation.Rd man/snv.Rd
performanceMetrics/.DS_Store
performanceMetrics/expands_2.0.0.txt
vignettes/.DS_Store
vignettes/.Rhistory
vignettes/ID_MRD_001.dist
vignettes/ID_MRD_001.tree
vignettes/ID_MRD_001_metKidney.cbs
vignettes/ID_MRD_001_metKidney.sps
vignettes/ID_MRD_001_metLung.cbs
vignettes/ID_MRD_001_metLung.sps
vignettes/ID_MRD_001_primPancreas.cbs
vignettes/ID_MRD_001_primPancreas.sps
vignettes/TCGA-06-0152-01.dist
vignettes/TCGA-06-0152-01.tree
vignettes/expands.Rnw
vignettes/expands.bib
vignettes/tmp.tree
noemiandor/expands documentation built on July 2, 2018, 4:17 a.m.