Files in noemiandor/expands

Expanding Ploidy and Allele-Frequency on Nested Subpopulations

.DS_Store

.Rbuildignore

.classpath

.project

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md

R/.DS_Store

R/.Rapp.history

R/Utils.R R/assignMutations.R R/assignQuantityToMutation.R R/assignQuantityToSP.R R/buildMultiSamplePhylo.R R/buildPhylo.R R/cellfrequency_pdf.R R/clusterCellFrequencies.R R/computeCellFrequencyDistributions.R R/gatherEXPANDSoutput.R R/onLoad.R R/plotSPs.R R/runExPANdS.R

R/sysdata.rda

bin/core/ParallelSubpopulations.class

bin/core/Subpopulation.class

bin/core/utils/AFtimesCopyNumber.class

bin/core/utils/Common.class

bin/core/utils/CopyNumber.class

bin/core/utils/Measurement.class

bin/core/utils/NotAValidCompositionException.class

cran-comments.md

data/.DS_Store

data/cbs.rda

data/simulation.rda

data/snv.rda

inst/.DS_Store

inst/java/.DS_Store

inst/java/expands.jar

java/.DS_Store

java/lib/commons-math3-3.0.jar

java/src/.DS_Store

java/src/core/ParallelSubpopulations.java

java/src/core/Subpopulation.java

java/src/core/utils/AFtimesCopyNumber.java

java/src/core/utils/Common.java

java/src/core/utils/CopyNumber.java

java/src/core/utils/Measurement.java

java/src/core/utils/NotAValidCompositionException.java

java/uml/EXPANDS.mdzip

java/uml/EXPANDS.mdzip.bak

java/uml/ParallelSubpopulations.tif

java/uml/expands2.tif

man/.DS_Store

man/.Rapp.history

man/assignMutations.Rd man/assignQuantityToMutation.Rd man/assignQuantityToSP.Rd man/buildMultiSamplePhylo.Rd man/buildPhylo.Rd man/cbs.Rd man/cellfrequency_pdf.Rd man/clusterCellFrequencies.Rd man/computeCellFrequencyDistributions.Rd man/gatherEXPANDSoutput.Rd man/plotSPs.Rd man/roi.Rd man/runExPANdS.Rd man/simulation.Rd man/snv.Rd

performanceMetrics/.DS_Store

performanceMetrics/expands_2.0.0.txt

vignettes/.DS_Store

vignettes/.Rhistory

vignettes/ID_MRD_001.dist

vignettes/ID_MRD_001.tree

vignettes/ID_MRD_001_metKidney.cbs

vignettes/ID_MRD_001_metKidney.sps

vignettes/ID_MRD_001_metLung.cbs

vignettes/ID_MRD_001_metLung.sps

vignettes/ID_MRD_001_primPancreas.cbs

vignettes/ID_MRD_001_primPancreas.sps

vignettes/TCGA-06-0152-01.dist

vignettes/TCGA-06-0152-01.tree

vignettes/expands.Rnw

vignettes/expands.bib

vignettes/tmp.tree

noemiandor/expands documentation built on Sept. 13, 2021, 6:25 p.m.