Man pages for noemiandor/expands
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
| assignMutations | Mutation Assignment |
| assignQuantityToMutation | Quantity assignment (copy number) to mutations |
| assignQuantityToSP | Quantity assignment (copy number) to subpopulations |
| buildMultiSamplePhylo | Relations between inter- and intra-sample subpopulations |
| buildPhylo | Relations between subpopulations |
| cbs | Matrix of copy number fragments |
| cellfrequency_pdf | Computes the probability distribution of cellular frequencies... |
| clusterCellFrequencies | Clustering of cellular frequency probability distributions |
| computeCellFrequencyDistributions | Gathering of cell frequency probability distributions |
| gatherEXPANDSoutput | Reading EXPANDS' output files |
| plotSPs | Subpopulation Visualization |
| roi | Regions of interest |
| runExPANdS | Main Function |
| simulation | Simulated heterogeneous samples |
| snv | Single Nucleotide Variations |
