Files in nolanlab/spade
SPADE -- An analysis and visualization tool for Flow Cytometry
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/annotation.R
R/autoAssign.R
R/cluster.R
R/downsample.R
R/driver.R
R/fcs.R
R/upsample.R
README.md
cleanup
configure
configure.ac
inst/doc/SPADE.Rnw
inst/doc/cytospade.png
inst/doc/science-tree-cd34.png
inst/doc/spaderef.bib
inst/extdata/SimulatedRawData.fcs
inst/tools/organize_fold_pdfs.sh
inst/tools/organize_median_pdfs.sh
inst/tools/runSPADE.R
m4/ac_openmp.m4
man/SPADE.FCSToTree.Rd
man/SPADE.addClusterToFCS.Rd
man/SPADE.addDensityToFCS.Rd
man/SPADE.annotateGraph.Rd
man/SPADE.downsampleFCS.Rd
man/SPADE.driver.Rd
man/SPADE.flattenAnnotations.Rd
man/SPADE.installPlugin.Rd
man/SPADE.layout.arch.Rd
man/SPADE.markerMedians.Rd
man/SPADE.plot.trees.Rd
man/SPADE.read.FCS.Rd
man/SPADE.write.graph.Rd
spade.Rproj
src/Makevars.in
src/Makevars.win
src/cluster.cc
src/downsample.cc
src/spade.cc
src/upsample.cc
src/util.h
vignettes/SPADE.Rnw
vignettes/cytospade.png
vignettes/science-tree-cd34.png
vignettes/spaderef.bib
