SPADE.read.FCS: Read an FCS File

In nolanlab/spade: SPADE -- An analysis and visualization tool for Flow Cytometry

Description

Read and FCS file, correcting problematic column names and applying compensation if requested. A wrapper around read.FCS.

Usage

SPADE.read.FCS(file, comp = TRUE, verbose = FALSE, ...)

Arguments

file	FCS filename
comp	boolean indicating whether to apply compensation
verbose	boolean indicating whether to not suppress warnings from upstream FCS file reader.
...	additional arguments are passed through to read.FCS

Details

A wrapper around read.FCS that copies FCS parameter "short name" to description when none is supplied, and applies compensation matrix stored in the SPILL or SPILLOVER keyword.

Value

a flowFrame object.

Author(s)

Michael Linderman <[e-mail]>

See Also

read.FCS

Examples

	fcs <- SPADE.read.FCS(system.file(file.path("extdata","SimulatedRawData.fcs"), package = "spade"))

nolanlab/spade documentation built on May 23, 2019, 9:32 p.m.