SPADE.read.FCS: Read an FCS File

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/fcs.R

Description

Read and FCS file, correcting problematic column names and applying compensation if requested. A wrapper around read.FCS.

Usage

1
SPADE.read.FCS(file, comp = TRUE, verbose = FALSE, ...)

Arguments

file

FCS filename

comp

boolean indicating whether to apply compensation

verbose

boolean indicating whether to not suppress warnings from upstream FCS file reader.

...

additional arguments are passed through to read.FCS

Details

A wrapper around read.FCS that copies FCS parameter "short name" to description when none is supplied, and applies compensation matrix stored in the SPILL or SPILLOVER keyword.

Value

a flowFrame object.

Author(s)

Michael Linderman <michael.linderman@mssm.edu>

See Also

read.FCS

Examples

1
	fcs <- SPADE.read.FCS(system.file(file.path("extdata","SimulatedRawData.fcs"), package = "spade"))

nolanlab/spade documentation built on May 23, 2019, 9:32 p.m.