SPADE.write.graph: Writing the graph to a file in some format

In nolanlab/spade: SPADE -- An analysis and visualization tool for Flow Cytometry

Description

General function for exporting graphs to foreign file formats, however at present only the GML format is implemented.

Usage

SPADE.write.graph(graph, file = "", format = c("gml"))

Arguments

graph	The graph to export
file	A connection or a string giving the file name to write the graph to.
format	Character string giving the file format.

Details

GML is general textual format for graphs.

The vertex and edge attributes are written to the file if they are numeric or strings. Currently only the graphics struct is supported, and only for vertices; graphics.x indicates an x attribute in the graphics struct.

Value

A NULL, invisibly

Author(s)

Michael Linderman

See Also

write.graph

Examples

	# Not run
	## Load two-parameters sample data included in package
	#data_file_path = paste(installed.packages()["spade","LibPath"],"spade","extdata","SimulatedRawData.fcs",sep=.Platform$file.sep)

	## Run basic SPADE analyses, clustering on two parameters. 
	#output_dir <- tempdir()
	#SPADE.driver(data_file_path, out_dir=output_dir, cluster_cols=c("marker1","marker2"))

	## Read and write minimum spanning tree graph 
	#mst_graph <- igraph:::read.graph(paste(output_dir,"mst.gml",sep=.Platform$file.sep),format="gml")
	#SPADE.write.graph(mst_graph, file = paste(output_dir,"new_mst.gml",sep=.Platform$file.sep), format = c("gml"))

nolanlab/spade documentation built on May 23, 2019, 9:32 p.m.