Files in nosarcasm/DGCA
Differential Gene Correlation Analysis
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/DGCA_package.R
R/adjustMIPval.R
R/adjustPVals.R
R/bigEmpPVals.R
R/dCor.R
R/dCorAvg.R
R/dCorClass.R
R/dCorMats.R
R/dcTopPairs.R
R/ddMEGENA.R
R/ddcorAll.R
R/ddcorAllParallel.R
R/ddcorAllParallelWorker.R
R/ddcorClasses.R
R/ddcorGO.R
R/ddplot.R
R/designMats.R
R/filterGenes.R
R/getCors.R
R/getDCorPerm.R
R/getDCors.R
R/getQValue.R
R/makeDesign.R
R/matCorSig.R
R/matCorr.R
R/matNSamp.R
R/moduleDC.R
R/moduleGO.R
R/pairwiseDCor.R
R/permQValue.R
R/plotCors.R
R/plotGOOnegroup.R
R/plotGOTwoGroups.R
R/plotVals.R
R/startCluster.R
R/topDCGenes.R
README.Rmd
README.md
build/vignette.rds
cran-comments.md
data/.Rapp.history
data/ages_darmanis.rda
data/darmanis.rda
data/design_mat.rda
ddcorParallelExample.R
examples/batchtools_minimal_package_local.R
inst/config/batchConfig_Local.R
inst/config/batchConfig_Zhang.R
inst/config/ddcorClasses.R
inst/config/minerva_LSF.tmpl
inst/doc/.Rhistory
inst/doc/DGCA.Rmd
inst/doc/DGCA.html
inst/doc/DGCA_basic.R
inst/doc/DGCA_basic.Rmd
inst/doc/DGCA_basic.html
inst/doc/DGCA_modules.Rmd
inst/doc/DGCA_modules.pdf
man/.Rapp.history
man/DGCA.Rd
man/adjustPVals.Rd
man/ages_darmanis.Rd
man/bigEmpPVals.Rd
man/corMats-class.Rd
man/dCorAvg.Rd
man/dCorClass.Rd
man/dCorMats.Rd
man/dCorrs.Rd
man/darmanis.Rd
man/dcPair-class.Rd
man/dcTopPairs.Rd
man/ddMEGENA.Rd
man/ddcorAll.Rd
man/ddcorAllParallel.Rd
man/ddcorAllParallelWorker.Rd
man/ddcorFindSignificant.Rd
man/ddcorGO.Rd
man/ddplot.Rd
man/design_mat.Rd
man/extractModuleGO.Rd
man/filterGenes.Rd
man/findGOTermEnrichment.Rd
man/getCors.Rd
man/getDCorPerm.Rd
man/getDCors.Rd
man/getGroupsFromDesign.Rd
man/getQValue.Rd
man/makeDesign.Rd
man/matCorSig.Rd
man/matCorSig.fuzz.Rd
man/matCorr.Rd
man/matNSamp.Rd
man/moduleDC.Rd
man/moduleGO.Rd
man/pairwiseDCor.Rd
man/permQValue.Rd
man/plotCors.Rd
man/plotGOOneGroup.Rd
man/plotGOTwoGroups.Rd
man/plotModuleGO.Rd
man/plotVals.Rd
man/switchGenesToHGCN.Rd
man/topDCGenes.Rd
tests/testthat.R
tests/testthat/darmanis_design_matrix.rda
tests/testthat/darmanis_test.rda
tests/testthat/test-adjP.R
tests/testthat/test-dCorAvg.R
tests/testthat/test-dCorrs.R
tests/testthat/test-ddcor-pipeline.R
tests/testthat/test-ddmegena.R
tests/testthat/test-filterGenes.R
tests/testthat/test-getCors.R
tests/testthat/test-matCors.R
vignettes/.Rhistory
vignettes/DGCA_basic.Rmd
vignettes/DGCA_basic.html
