Man pages for nosarcasm/DGCA
Differential Gene Correlation Analysis

adjustPValsAdjusts a numeric vector of p-values.
ages_darmanisBrain sample ages vector.
bigEmpPValsUse speed-optimized sorting to calculate p-values observed...
corMats-classAn S4 class to store correlation matrices and associated...
darmanisSingle-cell gene expression data from different brain cell...
dCorAvgGet average empirical differential correlations.
dCorClassClassify differential correlations.
dCorMatsFinds differential correlations between matrices.
dCorrsDifferential correlation between two conditions.
dcPair-classS4 class for pairwise differential correlation matrices and...
dcTopPairsCreates a data frame for the top differentially correlated...
ddcorAllCalls the DGCA pairwise pipeline.
ddcorAllParallelCalls the DGCA pairwise pipeline, splitting input matrix into...
ddcorAllParallelWorkerWorker thread for ddcorAllParallel (internal function).
ddcorFindSignificantFind groups of differentially correlated gene symbols.
ddcorGOGene ontology of differential correlation-classified genes.
ddMEGENAIntegration function to use MEGENA to perform network...
ddplotCreate a heatmap showing the correlations in two conditions.
design_matDesign matrix of cell type specifications of the single-cell...
DGCADGCA: An R package for Differential Gene Correlation Analysis
extractModuleGOExtract results from the module GO analysis
filterGenesFilter rows out of a matrix.
findGOTermEnrichmentFind GO enrichment for a gene vector (using GOstats).
getCorsCompute matrices necessary for differential correlation...
getDCorPermGet permuted groupwise correlations and pairwise differential...
getDCorsGet groupwise correlations and pairwise differential...
getGroupsFromDesignSplit input matrix(es) based on the design matrix.
getQValueCalculates qvalues for any kind of data, failing gracefully....
makeDesignCreate a design matrix from a character vector.
matCorrCalculate a correlation matrix.
matCorSigCalculate correlation matrix p-values.
matCorSig.fuzzCalculate correlation matrix p-values, adding a small noise...
matNSampFind the number of non-missing values.
moduleDCCalculate modular differential connectivity (MDC)
moduleGOPerform module GO-trait correlation
pairwiseDCorCalculate pairwise differential correlations.
permQValueCalculate q-values from DGCA class objects based on...
plotCorsPlot gene pair correlations in multiple conditions.
plotGOOneGroupPlot results from a hypergeometric enrichment test for one...
plotGOTwoGroupsPlot results from a hypergeometric enrichment test to compare...
plotModuleGOPlot extracted results from module-based GO enrichment...
plotValsCreates a dotplot of the overall values for an individual...
switchGenesToHGCNSwitches a gene vector to cleaned HGNC symbols.
topDCGenesRanks genes by their total number of differentially...
nosarcasm/DGCA documentation built on July 28, 2018, 1:45 p.m.