matCorSig.fuzz: Calculate correlation matrix p-values, adding a small noise...
In nosarcasm/DGCA: Differential Gene Correlation Analysis
Description
Usage
Arguments
Value
References
Description
Calculate two-sided p-values from a pairwise correlations matrix and a corresponding "number of samples" matrix, adding a small random noise term which is defined as epsilon * rand(0,1).
Usage
1
matCorSig.fuzz(corrs, nsamp, secondMat = FALSE, epsilon = 1e-06)
Arguments
corrs
Computed correlation matrix.
nsamp
Computed number of samples used per call in the correlation matrix.
secondMat
Logical indicator of whether there is a second matrix in the comparison or not.
epsilon
A number representing the maximum noise to add to each p-value. Default is 1e-6.
Value
A matrix of p-values.
References
HMisc R package https://cran.r-project.org/web/packages/Hmisc/index.html; Yang et al., A Fuzzy Permutation Method for False Discovery Rate Control, Nat Sci Rep (2016), https://www.nature.com/articles/srep28507
nosarcasm/DGCA documentation built on June 13, 2019, 11:49 p.m.
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Description Usage Arguments Value References
Description
Calculate two-sided p-values from a pairwise correlations matrix and a corresponding "number of samples" matrix, adding a small random noise term which is defined as epsilon * rand(0,1).
Usage
1 | matCorSig.fuzz(corrs, nsamp, secondMat = FALSE, epsilon = 1e-06)
|
Arguments
corrs |
Computed correlation matrix. |
nsamp |
Computed number of samples used per call in the correlation matrix. |
secondMat |
Logical indicator of whether there is a second matrix in the comparison or not. |
epsilon |
A number representing the maximum noise to add to each p-value. Default is 1e-6. |
Value
A matrix of p-values.
References
HMisc R package https://cran.r-project.org/web/packages/Hmisc/index.html; Yang et al., A Fuzzy Permutation Method for False Discovery Rate Control, Nat Sci Rep (2016), https://www.nature.com/articles/srep28507
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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