| adjustPVals | Adjusts a numeric vector of p-values. |
| ages_darmanis | Brain sample ages vector. |
| bigEmpPVals | Use speed-optimized sorting to calculate p-values observed... |
| corMats-class | An S4 class to store correlation matrices and associated... |
| darmanis | Single-cell gene expression data from different brain cell... |
| dCorAvg | Get average empirical differential correlations. |
| dCorClass | Classify differential correlations. |
| dCorMats | Finds differential correlations between matrices. |
| dCorrs | Differential correlation between two conditions. |
| dcPair-class | S4 class for pairwise differential correlation matrices and... |
| dcTopPairs | Creates a data frame for the top differentially correlated... |
| ddcorAll | Calls the DGCA pairwise pipeline. |
| ddcorAllParallel | Calls the DGCA pairwise pipeline, splitting input matrix into... |
| ddcorAllParallelWorker | Worker thread for ddcorAllParallel (internal function). |
| ddcorFindSignificant | Find groups of differentially correlated gene symbols. |
| ddcorGO | Gene ontology of differential correlation-classified genes. |
| ddMEGENA | Integration function to use MEGENA to perform network... |
| ddplot | Create a heatmap showing the correlations in two conditions. |
| design_mat | Design matrix of cell type specifications of the single-cell... |
| DGCA | DGCA: An R package for Differential Gene Correlation Analysis |
| extractModuleGO | Extract results from the module GO analysis |
| filterGenes | Filter rows out of a matrix. |
| findGOTermEnrichment | Find GO enrichment for a gene vector (using GOstats). |
| getCors | Compute matrices necessary for differential correlation... |
| getDCorPerm | Get permuted groupwise correlations and pairwise differential... |
| getDCors | Get groupwise correlations and pairwise differential... |
| getGroupsFromDesign | Split input matrix(es) based on the design matrix. |
| getQValue | Calculates qvalues for any kind of data, failing gracefully.... |
| makeDesign | Create a design matrix from a character vector. |
| matCorr | Calculate a correlation matrix. |
| matCorSig | Calculate correlation matrix p-values. |
| matCorSig.fuzz | Calculate correlation matrix p-values, adding a small noise... |
| matNSamp | Find the number of non-missing values. |
| moduleDC | Calculate modular differential connectivity (MDC) |
| moduleGO | Perform module GO-trait correlation |
| pairwiseDCor | Calculate pairwise differential correlations. |
| permQValue | Calculate q-values from DGCA class objects based on... |
| plotCors | Plot gene pair correlations in multiple conditions. |
| plotGOOneGroup | Plot results from a hypergeometric enrichment test for one... |
| plotGOTwoGroups | Plot results from a hypergeometric enrichment test to compare... |
| plotModuleGO | Plot extracted results from module-based GO enrichment... |
| plotVals | Creates a dotplot of the overall values for an individual... |
| switchGenesToHGCN | Switches a gene vector to cleaned HGNC symbols. |
| topDCGenes | Ranks genes by their total number of differentially... |
