DisjointSet: Return single linkage clusters from 'PairSummaries' objects.

In npcooley/SynExtend: Tools for Working With Synteny Objects

Return single linkage clusters from PairSummaries objects.

Description

Takes in a PairSummaries object and return a list of identifiers organized into single linkage clusters.

Usage

DisjointSet(Pairs,
            Verbose = FALSE)

Arguments

Pairs	A PairSummaries object.
Verbose	Logical indicating whether to print progress bars and messages. Defaults to FALSE.

Details

Takes in a PairSummaries object and return a list of identifiers organized into single linkage clusters.

Value

Returns a list of character vectors representing IDs of sequence features, typically genes.

Author(s)

Nicholas Cooley [e-mail]

See Also

FindSynteny, Synteny-class, PairSummaries, FindSets

Examples

data("Endosymbionts_Pairs03", package = "SynExtend")

Sets <- DisjointSet(Pairs = Endosymbionts_Pairs03,
                    Verbose = TRUE)

npcooley/SynExtend documentation built on May 2, 2024, 7:28 p.m.