EvoWeb: EvoWeb: Predictions from EvoWeaver

In npcooley/SynExtend: Tools for Working With Synteny Objects

EvoWeb: Predictions from EvoWeaver

Description

EvoWeb objects are outputted from predict.EvoWeaver.

This class wraps the simMat object with some other diagnostic information intended to help interpret the output of EvoWeaver predictions..

Format

An object of class "EvoWeb", which inherits from "simMat".

Details

predict.EvoWeaver returns a EvoWeb object, which bundles some methods to make formatting and printing of results slightly nicer. This currently only implements a plot function, but future functionality is in the works.

Author(s)

Aidan Lakshman [e-mail]

See Also

predict.EvoWeaver

simMat

plot.EvoWeb

Examples

##############
## Prediction with built-in model and data
###############

exData <- get(data("ExampleStreptomycesData"))

# Subset isn't necessary but is faster for a working example
ew <- EvoWeaver(exData$Genes[1:10])

evoweb <- predict(ew, Method='ExtantJaccard')

# print out results as an adjacency matrix
print(evoweb)

# print out results as a pairwise data.frame
as.data.frame(evoweb)

npcooley/SynExtend documentation built on Nov. 15, 2024, 3:02 p.m.