getWholeChromosomes: Get whole chromosomes from methylation data
In nrzabet/DMRcaller: Differentially Methylated Regions caller
Description
Usage
Arguments
Value
Author(s)
Examples
View source: R/generalFunctions.R
Description
Returns a GRanges object spanning from the first cytocine until
the last one on each chromosome
Usage
1
getWholeChromosomes(methylationData)
Arguments
methylationData
the methylation data stored as a GRanges
object with four metadata columns (see methylationDataList).
Value
a GRanges object will all chromosomes.
Author(s)
Nicolae Radu Zabet
Examples
1
2
3
4
5
# load the methylation data
data(methylationDataList)
# get all chromosomes
chromosomes <- getWholeChromosomes(methylationDataList[["WT"]])
nrzabet/DMRcaller documentation built on May 23, 2019, 2:50 p.m.
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Description Usage Arguments Value Author(s) Examples
View source: R/generalFunctions.R
Description
Returns a GRanges object spanning from the first cytocine until
the last one on each chromosome
Usage
1 | getWholeChromosomes(methylationData)
|
Arguments
methylationData |
the methylation data stored as a |
Value
a GRanges object will all chromosomes.
Author(s)
Nicolae Radu Zabet
Examples
1 2 3 4 5 | # load the methylation data
data(methylationDataList)
# get all chromosomes
chromosomes <- getWholeChromosomes(methylationDataList[["WT"]])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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