joinReplicates: Joins together two GRange objects in a single containing all...
In nrzabet/DMRcaller: Differentially Methylated Regions caller

Description Usage Arguments Value Author(s) Examples

This function joins together data that come from biological replicates to perform analysis

1	joinReplicates(methylationData1, methylationData2, usecomplete = FALSE)

`methylationData1`	the methylation data stored as a `GRanges` object with four metadata columns (see `methylationDataList`).
`methylationData2`	the methylation data stored as a `GRanges` object with four metadata columns (see `methylationDataList`).
`usecomplete`	Boolean, determine wheter, when the two dataset differ for number of cytosines, if the smaller dataset should be added with zero reads to match the bigger dataset.

returns a GRanges object containing multiple metadata columns with the reads from each object passed as parameter

Alessandro Pio Greco and Nicolae Radu Zabet

## Not run: 
# load the methylation data
data(methylationDataList)

# Joins the wildtype and the mutant in a single object
joined_data <- joinReplicates(methylationDataList[["WT"]],
                              methylationDataList[["met1-3"]], FALSE)

## End(Not run)