Files in nstrayer/entropynet

Investigate association networks using relative association and intepretable subgraph clustering

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

R/RcppExports.R R/associationsubgraphs-package.R R/helpers.R R/relative_association_functions.R R/subgraphs_functions.R R/visualize_association_network.R README.Rmd README.md

_pkgdown.yml

associationsubgraphs.Rproj

data-raw/arcos_et_al.txt

data-raw/mammal_virus_associations.csv

data-raw/mammal_virus_hosts.csv

data-raw/mammal_virus_viruses.csv

data-raw/virclasp_chikv_data.R data-raw/virclasp_protein_net.R data-raw/virus_host_data.R data-raw/virus_host_net.R data-raw/virus_subgraph_results.R

data/virus_component_results.rda

data/virus_host.rda

data/virus_host_hosts.rda

data/virus_host_viruses.rda

data/virus_net.rda

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

docs/articles/exploring_subgraph_results.html

docs/articles/exploring_subgraph_results_files/accessible-code-block-0.0.1/empty-anchor.js

docs/articles/exploring_subgraph_results_files/d3v5-5.0.0/API.md docs/articles/exploring_subgraph_results_files/d3v5-5.0.0/CHANGES.md

docs/articles/exploring_subgraph_results_files/d3v5-5.0.0/LICENSE

docs/articles/exploring_subgraph_results_files/d3v5-5.0.0/README.md

docs/articles/exploring_subgraph_results_files/d3v5-5.0.0/d3.min.js

docs/articles/exploring_subgraph_results_files/d3v5-5.9.2/API.md docs/articles/exploring_subgraph_results_files/d3v5-5.9.2/CHANGES.md

docs/articles/exploring_subgraph_results_files/d3v5-5.9.2/LICENSE

docs/articles/exploring_subgraph_results_files/d3v5-5.9.2/README.md

docs/articles/exploring_subgraph_results_files/d3v5-5.9.2/d3.min.js

docs/articles/exploring_subgraph_results_files/figure-html/unnamed-chunk-2-1.png

docs/articles/exploring_subgraph_results_files/header-attrs-2.3.9/header-attrs.js

docs/articles/exploring_subgraph_results_files/htmlwidgets-1.5.1/htmlwidgets.js

docs/articles/exploring_subgraph_results_files/r2d3-binding-0.2.3/r2d3.js

docs/articles/exploring_subgraph_results_files/r2d3-binding-0.2.4/r2d3.js

docs/articles/exploring_subgraph_results_files/r2d3-render-0.1.0/r2d3-render.js

docs/articles/exploring_subgraph_results_files/webcomponents-2.0.0/webcomponents.js

docs/articles/index.html

docs/articles/tests/testing_embed.html

docs/articles/tests/testing_embed_files/d3v5-5.9.2/API.md docs/articles/tests/testing_embed_files/d3v5-5.9.2/CHANGES.md

docs/articles/tests/testing_embed_files/d3v5-5.9.2/LICENSE

docs/articles/tests/testing_embed_files/d3v5-5.9.2/README.md

docs/articles/tests/testing_embed_files/d3v5-5.9.2/d3.min.js

docs/articles/tests/testing_embed_files/htmlwidgets-1.5.1/htmlwidgets.js

docs/articles/tests/testing_embed_files/r2d3-binding-0.2.4/r2d3.js

docs/articles/tests/testing_embed_files/r2d3-render-0.1.0/r2d3-render.js

docs/articles/tests/testing_embed_files/webcomponents-2.0.0/webcomponents.js

docs/authors.html

docs/bootstrap-toc.css

docs/bootstrap-toc.js

docs/docsearch.css

docs/docsearch.js

docs/index.html

docs/link.svg

docs/pkgdown.css

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/bootstrap_info_interval.html

docs/reference/build_count_vec.html

docs/reference/build_occurrence_vec.html

docs/reference/build_relative_associations.html

docs/reference/calc_ent_from_table.html

docs/reference/calc_entropy_net.html

docs/reference/calc_joint_ent.html

docs/reference/calc_mutual_info.html

docs/reference/calculate_subgraph_structure.html

docs/reference/calculate_subgraph_structure_rcpp.html

docs/reference/draw_null_info_binary.html

docs/reference/expand_combinations.html

docs/reference/explore_subgraph_structure.html

docs/reference/find_all_subgraphs.html

docs/reference/gather_avg_strength.html

docs/reference/index.html

docs/reference/join_pair_lists.html

docs/reference/partial_entropy.html

docs/reference/pipe.html

docs/reference/simulate_sticky_association_network.html

docs/reference/tidyeval.html

docs/reference/visualize_all_subgraphs.html

docs/reference/visualize_association_network.html

docs/reference/visualize_subgraph_structure.html

inst/d3/d3_helpers.js

inst/d3/explore_subgraph_structure.js

inst/d3/find_subgraphs.js

inst/d3/information_network.js

inst/d3/visualize_all_subgraphs.js

man/build_relative_associations.Rd man/calculate_subgraph_structure.Rd man/calculate_subgraph_structure_rcpp.Rd man/gather_avg_strength.Rd man/join_pair_lists.Rd man/simulate_sticky_association_network.Rd man/visualize_association_network.Rd man/visualize_subgraph_structure.Rd scratch.R

src/.gitignore

src/RcppExports.cpp

src/calculate_subgraph_structure.cpp

tests/testthat.R tests/testthat/test-normalizing_associations.R tests/testthat/test-subgraph_finding_algorithm.R

vignettes/.gitignore

vignettes/exploring_subgraph_results.Rmd

nstrayer/entropynet documentation built on Oct. 12, 2020, 2:20 a.m.