oneRegionSegment | R Documentation |
This function makes a segmentation (GRanges) based on one region of one chromosome (seqnames).
oneRegionSegment(x, seqlength)
x |
a single region as GRanges object |
seqlength |
optional, the length of the chromosome,
if not provided, the function will attempt to pull this
using |
a segmentation (GRanges object) with the region of interest designated as state 2, and the rest of the chromosome as state 1.
library(GenomicRanges)
library(GenomeInfoDb)
x <- GRanges("chr1", IRanges(10e6+1,width=1e6))
genome(x) <- "hg19"
seg <- oneRegionSegment(x)
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