reduceSegment: Combine nearby regions with same state
In nullranges/nullranges: Generation of null ranges via bootstrapping or covariate matching
reduceSegment R Documentation
Combine nearby regions with same state
Description
Combine nearby regions with same state
Usage
reduceSegment(x, col = "state")
Arguments
x
the input GRanges
col
the name of the column for the segment states
Value
a GRanges with metadata column state
giving the segmentation state
Examples
n <- 10000
library(GenomicRanges)
gr <- GRanges("chr1", IRanges(round(
c(runif(n/4,1,991), runif(n/4,1001,3991),
runif(n/4,4001,4991), runif(n/4,7001,9991))),
width=10), seqlengths=c(chr1=10000))
gr$name <- rep(1:4,each=10)
gr <- sort(gr)
seg <- reduceSegment(gr, col="name")
nullranges/nullranges documentation built on Aug. 29, 2023, 12:13 a.m.
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| reduceSegment | R Documentation |
Combine nearby regions with same state
Description
Combine nearby regions with same state
Usage
reduceSegment(x, col = "state")
Arguments
x |
the input GRanges |
col |
the name of the column for the segment states |
Value
a GRanges with metadata column state
giving the segmentation state
Examples
n <- 10000
library(GenomicRanges)
gr <- GRanges("chr1", IRanges(round(
c(runif(n/4,1,991), runif(n/4,1001,3991),
runif(n/4,4001,4991), runif(n/4,7001,9991))),
width=10), seqlengths=c(chr1=10000))
gr$name <- rep(1:4,each=10)
gr <- sort(gr)
seg <- reduceSegment(gr, col="name")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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