In nullranges/nullrangesOldData: Datasets for the nullranges package

The nullrangesData package provides datasets for the nullranges package vignette, in particular example datasets for exclusion regions, DNase hypersensitivity sites (DHS), CTCF binding sites, and CTCF genomic interactions.

library(nullrangesData)
suppressPackageStartupMessages(library(GenomicRanges))
suppressPackageStartupMessages(library(InteractionSet))

Excluded regions (see ?exclude for details).

data("exclude")
exclude

A549 DHS peaks (see ?DHSA549Hg38 for details).

data("DHSA549Hg38")
DHSA549Hg38

CTCF binding sites, 10kb bins with CTCF and DHS peaks, and CTCF-bound genomics interactions. See corresponding man pages for details.

data("CTCF_hg19")
data("hg19_10kb_bins")
data("hg19_10kb_ctcfBoundBinPairs")
CTCF_hg19
hg19_10kb_bins

Session information

sessionInfo()

nullranges/nullrangesOldData documentation built on Dec. 22, 2021, 3:19 a.m.